Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1131 ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTAATGGCTCTACGAAGAGATGCAAATTGGGAAGCCATTCCAACCGAAATCACCGATCTCTGCTCAAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCACTGTAAATTTTCCCCCAAATTCTTCTTCAGAACCTCTCTCCGCTCAGAATCTCGACGAATTTTACCATCCTTTAGCAAATGAGTTCTCAGTACCACAAATGCCTGATTCCGCTTATACCGCCATGGAAGTAGCAGCAGCAGCCACTGCGCCTCTGCCATTTCAACCAGCGCATCCGAATGTGGAGCGAGAAGAAGAGGAAGAGGGACTAGGTTTTCTCGCGGATGAGATTCAGAATATGGAAACAGTTCAAGTTGAATCGGCTTGTAAAATGGAGCCGAACCAATCTCCAGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCCTGGAACGAAAGAACAGAGCGAAGAAATTGCAAGGCCAACCATCAAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCAATGCTCAGATCCATTGTCCCGAAGATCAGTAAGATGGACAGAACAGCGATTCTGGCAGATGCGATTGAGTATATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGCGAAGTAGAAGGATCAAATCTGAGGACGAATTCATTGAAGAACACAAAACCGAGTGAATTCGTAGTGAGGAATTCACCAAAATTTGAAGTAGAAAACAGAAATGGAGACACGAGAATCGAGATTTGCTGTGCGGGAAAGCCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCTACTTGTTCTTCTCAGGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGCTATGGAGGAAGCTGCTTGTAG 1014 45.07 MELDEHVFLEELMALRRDANWEAIPTEITDLCSNAWAFDYCFDQSTVNFPPNSSSEPLSAQNLDEFYHPLANEFSVPQMPDSAYTAMEVAAAATAPLPFQPAHPNVEREEEEEGLGFLADEIQNMETVQVESACKMEPNQSPEELQVFNIGTCSSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQSEVEGSNLRTNSLKNTKPSEFVVRNSPKFEVENRNGDTRIEICCAGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQELKQRTELKPEELKEALFRNAGYGGSCL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24491564 24493855 + CrPI670011_08g011310.1 Cre08g1131 506049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1131 337 Pfam Helix-loop-helix DNA-binding domain 174 216 IPR011598 GO:0046983(InterPro)
Cre08g1131 337 Gene3D - 156 233 IPR036638 GO:0046983(InterPro)
Cre08g1131 337 SMART finulus 173 222 IPR011598 GO:0046983(InterPro)
Cre08g1131 337 Coils Coil 206 233 - -
Cre08g1131 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983(InterPro)
Cre08g1131 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 133 332 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre08g1131 337 CDD ACT_UUR-ACR-like 262 303 - -
Cre08g1131 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 234 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1131 Cre-Chr8:24491564 Cre11g1598 Cre-Chr11:26382814 2.80E-12 dispersed
Cre03g0694 Cre-Chr3:5862860 Cre08g1131 Cre-Chr8:24491564 1.20E-33 transposed
Cre05g1433 Cre-Chr5:17564623 Cre08g1131 Cre-Chr8:24491564 9.20E-34 transposed
Cre11g1904 Cre-Chr11:30779070 Cre08g1131 Cre-Chr8:24491564 1.40E-77 wgd
Cre04g1437 Cre-Chr4:33194742 Cre08g1131 Cre-Chr8:24491564 1.30E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54198 PF00010 HLH 6.20E-10 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1131 - - - 0.0