Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1137 ATGGTGATGCCGGAGTCGTCTGAGGGCCACCGGACGGCGTCTCGTCGAGCGAATCGACCGCCGACTCGACCGCTTGTCGGACCTAGGGTTCCGCTGAGACGGTTACTCCGCGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTCACTCCTTATATTCAAGAGCTCGGTATTCCTCACGCTTGGTCTAGTCTCATATGGCTCTGCGGACCGCTTTCCGGCCTCTTTGTCCAACCACTTGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGTTGGAGCGTTTTCCATAGTACTCGCCGTTTTGATTATTGGTCACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGGTTGGTTTTTGGATTCTCGACGTTGCTAACAACGTCTCCCAGGGTCCGTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCGACTGGATCTTTTAGTGGCTGGTACAAGATCTTCCCGTTTACTCGTACCTCTGCATGTTCTGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATTGTGTTCATTGCAATTACAACATATTTGAGTGTATCAGCAGCTCAAGAGTTGCCTTTAGTTTCAAGCGACAGGTCCTCCCTGGTTTTAGAAGAAGGTATGGGGCAGTCAAGTCATGCTTCAGAAGCATTTCTCTGGGACCTGTTACGGACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTCCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATCTATGGTGGCAAGCCAAATGAAGGACAGGCTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTGTAACTCTGTTGTCCTCGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCTAATATTTTTATGGGTCTATGTTTTCTTACTATCCTGGTTGTTTCGTATGTGGCAAACAATATGGGCTATATAGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCACGTGTTGAATCTTTACAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTTGCTCAGAACCCCAGAAACCTCACATGAGAATATTTGAAAAGCTTGGTTGGTGTGCATCTCATCCATGA 1503 46.57 MVMPESSEGHRTASRRANRPPTRPLVGPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDHCTSRYGRRRPFIVVGAFSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYATGSFSGWYKIFPFTRTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQELPLVSSDRSSLVLEEGMGQSSHASEAFLWDLLRTFRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQAYSSGVRMGAFGLMCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMGLCFLTILVVSYVANNMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGLSAGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFACSEPQKPHMRIFEKLGWCASHP 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24580666 24585778 - CrPI670011_08g011370.1 Cre08g1137 506055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1137 500 FunFam Sucrose transport protein 29 483 - -
Cre08g1137 500 PANTHER SUGAR TRANSPORTER 28 465 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cre08g1137 500 CDD MFS_SLC45_SUC 35 478 - -
Cre08g1137 500 Gene3D MFS general substrate transporter like domains 32 480 IPR036259 -
Cre08g1137 500 Pfam MFS/sugar transport protein 47 444 - -
Cre08g1137 500 NCBIfam sucrose/proton symporter 30 479 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Cre08g1137 500 MobiDBLite consensus disorder prediction 1 25 - -
Cre08g1137 500 SUPERFAMILY MFS general substrate transporter 33 470 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1137 K15378 - - csv:101220384 893.264
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0284 Cre-Chr1:2227683 Cre08g1137 Cre-Chr8:24580666 4.90E-119 dispersed
Cre08g1137 Cre-Chr8:24580666 Cre11g1419 Cre-Chr11:19409123 4.70E-125 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g1419 . 14 492 Sucrose Transporter Gene Family AT1G22710 62.2 1.9e-174 609.4
Cre11g1426 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 4.3e-174 608.2
Cre08g1137 . 32 477 Sucrose Transporter Gene Family AT1G22710 50.9 7.0e-132 468.0
Cre11g1419 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre11g1426 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre08g1137 . 25 477 Sucrose Transporter Gene Family AT2G14670 51.6 2.4e-129 459.5
Cre11g1419 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre11g1426 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre01g0284 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.3e-182 635.6
Cre11g1419 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre11g1426 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.4 2.3e-124 443.0
Cre11g1419 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre11g1426 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.0 1.5e-126 450.3
Cre08g1137 . 18 478 Sucrose Transporter Gene Family AT1G09960 71.5 6.2e-197 684.1
Cre11g1419 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1426 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1419 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.6 1.7e-170 596.3
Cre11g1426 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 5.0e-170 594.7
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.6 4.0e-127 452.2
Cre11g1419 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1426 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1419 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.6 1.7e-170 596.3
Cre11g1426 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 5.0e-170 594.7
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.6 4.0e-127 452.2
Cre11g1419 . 14 492 Sucrose Transporter Gene Family AT1G22710 62.2 1.9e-174 609.4
Cre11g1426 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 4.3e-174 608.2
Cre08g1137 . 32 477 Sucrose Transporter Gene Family AT1G22710 50.9 7.0e-132 468.0
Cre01g0284 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.3e-182 635.6
Cre08g1137 . 18 478 Sucrose Transporter Gene Family AT1G09960 71.5 6.2e-197 684.1
Cre11g1419 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1426 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1419 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1426 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1419 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre11g1426 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.0 1.5e-126 450.3
Cre11g1419 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre11g1426 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre11g1419 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre11g1426 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre08g1137 . 25 477 Sucrose Transporter Gene Family AT2G14670 51.6 2.4e-129 459.5
Cre11g1419 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre11g1426 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.4 2.3e-124 443.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30