Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1139 ATGGGTTTCCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTACTTTCTCCTTCTCTTCTTCTCAAGCTCTTACTACTTCTGCTACTAACAACCAATCTCAGTTCTTTTATCTCATGCAAAAGACTGCCTCAGGAGAGTTCCTGTCTGATTGGGATCTTTCAGGAGGCAAATCCTTCTGCAGCTTCACTGGAATCCGGTGCAATGACCGAGGTCACGTTGTCGAGATTGATATCACTGGCCAGTCACTCTCTGGTAGCTTTCCGGAAGATGTATGTTCTTACTTGCCAGAGCTGAGAGTTCTTCGTCTCGCTGGTACCAGTTTCTACGGACGTTTTCCTTCAGGAATCACCAACTGCTCTCTCATTGAAGAACTTAACATGAGCTCTTTGTATCTCAATGGAACTATCCCAGATTTATCGCAAATGAAACGACTGCGTGTACTCGACCTCTCGTACAATTTCTTTACCGGTGATTTTCCCATGTCGGTTTTCGAGCTTGTTAATCTTGAGGTGCTGAATTTCAATGAGAACTACAACCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGCCTGACGAAGCTGAAATCTATGGTGTTGACAACCTGTATGTTAGATGGTGAAATCCCCCGATCGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAGAGAAATCTCCTTGCTGAAGAACTTGCAACAACTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAGGAGCTTGGAAATTTAACAGAGCTTGTGGACATGGACATGTCAGTGAACCTTTTGACAGGAGAGCTTCCAGAATCCATTTGTAAACTTCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAGTGTACTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACTGGACAGATTCCACAAAAGTTGGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCGGAAAATCGCCTGTCGGGGCCATTGCCATTGGACATATGCAGAGGAGGGAAATTGCTATACTTTCTTGTCCTGCAAAATAGGCTTTCTGGAGAAATACCAGCAAGTTTCGCTGAATGCATATCACTTTTAAGGTTTAGGATTAGTTTCAATCAGTTGATAGGAACAATTCCTGAAGGAGTTTTGGGTCTCCCCCATGTTTCAATTATTGATGTTGCTCATAATAATCTCACTGGTTCCATTTCAAATTCTATCTCACAGGCAAGAAACTTGTCAGAGTTGTTCTTACAAGGAAACAGGATTTCTGGAGTCATACCACCAGAGATTTCAGGAGCAGCCAATCTGGTGAAGCTTGATCTCAGCAACAATCTTCTCTCGGGTCCAGTGCCATCGCAGATTGGCAATCTGATGAAACTAAATCAGGTGACGTTACAAGGAAACCAATTGGATTCTTCAATCCCCACTTCATTCACATCTTTAAAATCTCTCAACGTTCTTGATCTCTCGAACAACCGTTTATCCGGGAAAATCCCAGAAAGTTTGAGTGAATTGTTCCCAAGTTCTTTGAATTTTTCGAACAATCAACTATCGGGTCCAATTCCTTTGTCTTTGATCAAACAAGGATTAGCAGATAGCTTCTCCGGCAACCCAAATCTATGTGTTCCACCGGCGTATTTCATTTCACCTGATCAGAAATTCCCCATTTGTTCACATTTCTCCTTTAAAAAACGTCTAAATTTCATCTGGGGAATCGTTATTCCATTGCTCATCTTCTTCACCGGCGCCGTCCTGTTTCTAAAACGACGAATCACAACAAGAAAAACATCAGAGATCGAAAACGAACAAACCCTCTCCTCTTCATTCTTCCATTTGCAGAGCTTCGATCAAAGCAGGATTCTCGAAGCCATGGTGGAAAAGAACATTGTGGGACACGGTGGATCAGGAACAGTCTACAAAATTGAGCTCGGAAATGGAGAAATCGTCGCCGTGAAGAGGCTATGGAATCGAAGAGCGAAACATCTCTTCGACAAAGAATTGAAAACAGAGGTCGAAACCCTAGGAACAATAAGACACAAGAACATCGTGAAACTCTATAGCTACTTTTCAGGTCTAAATTGCAGCCTTCTGGTTTACGAATACATGCCAAACGGCAATTTATGGGACGCCCTTCATAAAGGGTCGATTCATCTTGATTGGCCCACGCGCCACCGCATCGCGGTGGGAATCGCACAAGGTCTCGCTTATCTCCACCACGATCTCTCGCCGCCGGTAATCCACAGAGATATCAAAACCACAAACATTCTATTAGATGCAAATTACCAACCCAAAGTTGCAGATTTCGGCATCGCCAAAGTTCTACAAGGAACTAAAGATTCAACCAACTCTGTAATCGCAGGGACATACGGCTATCTAGCCCCTGAATATGCATATTCATCAAAGGCAACAACCAAGTGCGATGTGTATAGCTTTGGAGTAGTGTTGATGGAGTTGATAACAGGGAAGAAGCCGATTGAAACAGAGTACGGTGAAAACAAGAACATAGTGTTCTGGGTTTCGAACAAAGTGGACACAAAAGAAGGGGTTCTTGAGATTCTTGACAAGAAACTAAAAGGGTTGTTCAGGGATGATATAATTAAGGCTCTGAGAATCGCCATTCGCTGTACTTACAAGAATCCAGTGCTTCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGACCGTCCCTTTGAAAAAGGAGAAGATACGTATATGATGTCACTAAAATAA 2823 42.83 MGFHSAFFLLLFFTTFSFSSSQALTTSATNNQSQFFYLMQKTASGEFLSDWDLSGGKSFCSFTGIRCNDRGHVVEIDITGQSLSGSFPEDVCSYLPELRVLRLAGTSFYGRFPSGITNCSLIEELNMSSLYLNGTIPDLSQMKRLRVLDLSYNFFTGDFPMSVFELVNLEVLNFNENYNLNLWKLPEKISSLTKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPREISLLKNLQQLELYYNELTGNIPEELGNLTELVDMDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVLDLSENRLSGPLPLDICRGGKLLYFLVLQNRLSGEIPASFAECISLLRFRISFNQLIGTIPEGVLGLPHVSIIDVAHNNLTGSISNSISQARNLSELFLQGNRISGVIPPEISGAANLVKLDLSNNLLSGPVPSQIGNLMKLNQVTLQGNQLDSSIPTSFTSLKSLNVLDLSNNRLSGKIPESLSELFPSSLNFSNNQLSGPIPLSLIKQGLADSFSGNPNLCVPPAYFISPDQKFPICSHFSFKKRLNFIWGIVIPLLIFFTGAVLFLKRRITTRKTSEIENEQTLSSSFFHLQSFDQSRILEAMVEKNIVGHGGSGTVYKIELGNGEIVAVKRLWNRRAKHLFDKELKTEVETLGTIRHKNIVKLYSYFSGLNCSLLVYEYMPNGNLWDALHKGSIHLDWPTRHRIAVGIAQGLAYLHHDLSPPVIHRDIKTTNILLDANYQPKVADFGIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDTKEGVLEILDKKLKGLFRDDIIKALRIAIRCTYKNPVLRPAMGEVVQLLQEVDPCKFDRPFEKGEDTYMMSLK 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24599080 24601994 + CrPI670011_08g011390.1 Cre08g1139 506057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1139 940 Gene3D Phosphorylase Kinase; domain 1 631 724 - -
Cre08g1139 940 FunFam Leucine-rich repeat receptor-like protein kinase 182 284 - -
Cre08g1139 940 PRINTS Leucine-rich repeat signature 459 472 - -
Cre08g1139 940 PRINTS Leucine-rich repeat signature 504 517 - -
Cre08g1139 940 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 919 IPR050647 -
Cre08g1139 940 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524(InterPro)
Cre08g1139 940 FunFam receptor protein-tyrosine kinase CEPR1 630 724 - -
Cre08g1139 940 Gene3D Transferase(Phosphotransferase) domain 1 725 928 - -
Cre08g1139 940 Gene3D Ribonuclease Inhibitor 283 575 IPR032675 -
Cre08g1139 940 Pfam Protein kinase domain 649 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1139 940 ProSiteProfiles Protein kinase domain profile. 647 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1139 940 FunFam Receptor protein-tyrosine kinase CEPR1 288 574 - -
Cre08g1139 940 Gene3D Ribonuclease Inhibitor 34 181 IPR032675 -
Cre08g1139 940 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g1139 940 SMART serkin_6 647 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1139 940 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
Cre08g1139 940 SUPERFAMILY L domain-like 257 573 - -
Cre08g1139 940 SUPERFAMILY RNI-like 72 351 - -
Cre08g1139 940 SMART LRR_typ_2 288 312 IPR003591 -
Cre08g1139 940 SMART LRR_typ_2 433 456 IPR003591 -
Cre08g1139 940 SMART LRR_typ_2 240 264 IPR003591 -
Cre08g1139 940 SMART LRR_typ_2 504 528 IPR003591 -
Cre08g1139 940 SMART LRR_typ_2 166 192 IPR003591 -
Cre08g1139 940 ProSiteProfiles Leucine-rich repeat profile. 506 528 IPR001611 GO:0005515(InterPro)
Cre08g1139 940 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515(InterPro)
Cre08g1139 940 Pfam Leucine Rich Repeat 434 455 IPR001611 GO:0005515(InterPro)
Cre08g1139 940 Pfam Leucine Rich Repeat 506 528 IPR001611 GO:0005515(InterPro)
Cre08g1139 940 Pfam Leucine Rich Repeat 144 163 IPR001611 GO:0005515(InterPro)
Cre08g1139 940 Pfam Leucine Rich Repeat 290 311 IPR001611 GO:0005515(InterPro)
Cre08g1139 940 Pfam Leucine Rich Repeat 458 480 IPR001611 GO:0005515(InterPro)
Cre08g1139 940 FunFam leucine-rich repeat receptor-like protein kinase TDR 725 926 - -
Cre08g1139 940 SUPERFAMILY Protein kinase-like (PK-like) 625 916 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0809 Cre-Chr8:21155273 Cre08g1139 Cre-Chr8:24599080 1.70E-78 dispersed
Cre08g1139 Cre-Chr8:24599080 Cre11g1911 Cre-Chr11:30884701 2.20E-184 dispersed
Cre11g0541 Cre-Chr11:2390614 Cre08g1139 Cre-Chr8:24599080 6.40E-21 transposed
Cre11g1928 Cre-Chr11:31044581 Cre08g1139 Cre-Chr8:24599080 2.90E-22 wgd
Cre04g1420 Cre-Chr4:32992807 Cre08g1139 Cre-Chr8:24599080 4.50E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64344 PF00069 Pkinase 2.90E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1139 - - - 0.0