Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1153 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCCACCACCGAACCCGAAATTACCACCACCGCGGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCCGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCATCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1050 53.14 MEAPEYFQINGYCSQFATHSSSDNDSATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSAVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPEITTTAGPPHPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24761536 24763307 - CrPI670011_08g011530.1 Cre08g1153 506071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1153 349 Gene3D - 232 283 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre08g1153 349 PANTHER GATA TRANSCRIPTION FACTOR 34 305 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cre08g1153 349 MobiDBLite consensus disorder prediction 179 203 - -
Cre08g1153 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 297 - -
Cre08g1153 349 SMART GATA_3 233 283 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1153 349 FunFam GATA transcription factor 231 316 - -
Cre08g1153 349 MobiDBLite consensus disorder prediction 172 237 - -
Cre08g1153 349 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1153 349 PIRSF Txn_fac_GATA_plant 15 328 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cre08g1153 349 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1153 349 CDD ZnF_GATA 238 285 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1153 349 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1153 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1153 Cre-Chr8:24761536 Cre09g0006 Cre-Chr9:390164 1.30E-65 dispersed
Cre10g1482 Cre-Chr10:28682723 Cre08g1153 Cre-Chr8:24761536 3.60E-29 transposed
Cre11g1931 Cre-Chr11:31087464 Cre08g1153 Cre-Chr8:24761536 7.70E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1153 . 83 349 C2C2-Gata Transcription Factor Family AT5G25830 55.7 9.3e-69 257.7
Cre11g1931 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 1.8e-67 253.4
Cre04g1619 . 108 284 C2C2-Gata Transcription Factor Family AT4G36240 50.3 9.1e-42 167.5
Cre10g0478 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.1 2.7e-139 492.7
Cre09g1243 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 1.0e-135 480.7
Cre10g0478 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 5.1e-121 431.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54200 PF00320 GATA 1.80E-15 CL0167 Cre TF