Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1153 | ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCCACCACCGAACCCGAAATTACCACCACCGCGGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCCGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCATCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA | 1050 | 53.14 | MEAPEYFQINGYCSQFATHSSSDNDSATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSAVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPEITTTAGPPHPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24761536 | 24763307 | - | CrPI670011_08g011530.1 | Cre08g1153 | 506071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1153 | 349 | Gene3D | - | 232 | 283 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cre08g1153 | 349 | PANTHER | GATA TRANSCRIPTION FACTOR | 34 | 305 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Cre08g1153 | 349 | MobiDBLite | consensus disorder prediction | 179 | 203 | - | - | |
Cre08g1153 | 349 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 235 | 297 | - | - | |
Cre08g1153 | 349 | SMART | GATA_3 | 233 | 283 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre08g1153 | 349 | FunFam | GATA transcription factor | 231 | 316 | - | - | |
Cre08g1153 | 349 | MobiDBLite | consensus disorder prediction | 172 | 237 | - | - | |
Cre08g1153 | 349 | ProSiteProfiles | GATA-type zinc finger domain profile. | 233 | 269 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre08g1153 | 349 | PIRSF | Txn_fac_GATA_plant | 15 | 328 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Cre08g1153 | 349 | ProSitePatterns | GATA-type zinc finger domain. | 239 | 264 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre08g1153 | 349 | CDD | ZnF_GATA | 238 | 285 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre08g1153 | 349 | Pfam | GATA zinc finger | 239 | 273 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g1153 | Cre-Chr8:24761536 | Cre09g0006 | Cre-Chr9:390164 | 1.30E-65 | dispersed | |
Cre10g1482 | Cre-Chr10:28682723 | Cre08g1153 | Cre-Chr8:24761536 | 3.60E-29 | transposed | |
Cre11g1931 | Cre-Chr11:31087464 | Cre08g1153 | Cre-Chr8:24761536 | 7.70E-82 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54200 | PF00320 | GATA | 1.80E-15 | CL0167 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1153 | - | - | - | 0.0 |