Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1153 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCCACCACCGAACCCGAAATTACCACCACCGCGGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCCGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCATCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1050 53.14 MEAPEYFQINGYCSQFATHSSSDNDSATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSAVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPEITTTAGPPHPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 349
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 24761536 24763307 - CrPI670011_08g011530.1 Cre08g1153 506071
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1153 349 Gene3D - 232 283 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre08g1153 349 PANTHER GATA TRANSCRIPTION FACTOR 34 305 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cre08g1153 349 MobiDBLite consensus disorder prediction 179 203 - -
Cre08g1153 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 297 - -
Cre08g1153 349 SMART GATA_3 233 283 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1153 349 FunFam GATA transcription factor 231 316 - -
Cre08g1153 349 MobiDBLite consensus disorder prediction 172 237 - -
Cre08g1153 349 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1153 349 PIRSF Txn_fac_GATA_plant 15 328 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cre08g1153 349 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1153 349 CDD ZnF_GATA 238 285 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1153 349 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1153 Cre-Chr8:24761536 Cre09g0006 Cre-Chr9:390164 1.30E-65 dispersed
Cre10g1482 Cre-Chr10:28682723 Cre08g1153 Cre-Chr8:24761536 3.60E-29 transposed
Cre11g1931 Cre-Chr11:31087464 Cre08g1153 Cre-Chr8:24761536 7.70E-82 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54200 PF00320 GATA 1.80E-15 CL0167 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1153 - - - 0.0