Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1160 ATGGAGTCTGTTGCCTCTACTTCATCCCCTCATCACGTTCCTCGGTTCAAGCCCTCCCAAGCTGTGGCCGATAGGATTGTTAGAGCTCTCCACCATGACCTCCGTCTTCTTCACCGCTCCGGTTCTAATTTCTTTGTGTTGGGAGCCACAGGCAATGTTTACATCGTGTCTCTATCCTCCACCCCCTCATGCACTTGCCCCGATCGTATTACCCCATGTAAACACATACTGTTTATCTACCTTCAGGCCCTGGGTTTGTCGCTTGATGACATATGTCTTCGGCGAAGAACACTTCGACCTTGCCAATTGAATCGTTTGCTTGCTGCACCCATAATGTTAAAATCACTTGCAGAAGTTGGCTTACGTAGAGTGTTTCATCAACAATTTTTTCAGGTAAAAGAAAGAGCTTCTTCTTCCGTGACTGTTGTAGATATGGAAGATGGGTCTACATGTCCAGTTTGTTTGGATGATATGAAGAAGAAGGATCGGGTTGTCGCTTGTTCGACATGTCGGAATCTTGTTCATGAAGATTGTTTCTTGAGGTGGAAACGAAGCAAGGGAAGGAGAAATGTTAGTTGTGTAGTTTGCAGGGCACGGTGGAAAGATACGAAAAACCAACAAAATTTTCTGGTAAGAAAGGCGATGGAGGACTCCGGGACTCGACCTTCTGCCGGTAAATCGGCTGGTAATGTCGTCGCTATTGCTGCCGGTGAAGCTCACACTCTCCTTCTCACAGGAGATGGCAGGATGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGGCGGAAGCAGACGAGCTTTTCCCTGTCCGAGTTAAGCTTGGTTCGGAGGAAGAGAATCTCAAAGTTATGGCAATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGATGATGGTTCAGTTTGGTGCTGGGGTTACAATATCTACGGCCAACTTGGATTTGATGGAGGGAATTCCGCCACCCCTTGCTTGCTGAAACAGTTCCTTGAGTTGGAATCTCCAGAATCTTTGACAGAAGAGTCAGGCTCAAAGAGTAAGGAGTCACTAAAGATTTGTGACATCAAAGCCGGGGGGTTGATTTCTTTTGCAATTGACGATCTTGGAGCCCTATGGATGTGGGGTAATTGTCCAAAACCAAATGGTGAGAATGAAGCTGGCTTATCTTATGTTAGCAGCTTCACACCCTCTCCGGTGTGGGAGTTCCATGGCCATACTGTTGTTAAGGTTGCTTGTGGAAATGAGCATATTGTGGCGCTGGTTAGTGTTGGGGAAACCTACAATAATGGTGAAGACTTAGTTTGCTACTCCTGGGGAGATAATTCTCATGGTCAATTAGGCTTGGGAGATAGAGATGGCAGACCACACCCCCAAATTATCGAGACATTTAATGAGGCATCTCCTTGGGCAGTGTACGAAGTAGCATGCGGGGCATTCCATACTGCTTTACTTAGCCGCAGAAAGAGACCATGTGACGGCTTAGAAAGTGTGTGTTGGACATTTGGTCTCGGGGAAAATGGACAGCTTGGGCATGGAACCACCCAAAATGAATTGCTTCCTAAGCCTGTAAAAGAGTTGCCACAATCTGTATCTCTGATCTCAGTTGATTGTGGCCTATTTCATACGAGTGTTGTTTCATCAGGTGGAGATCTGTGGTCTTGGGGAATGGAAAGGGGACTTGGCCTTTGTCCAGATGCTAGTTTTACTGGAACTGACACCGGCGATGCTATATCTCCCCTATCCTTCTTCTGTAATGGGTCTGAATCACCAAAATTTTTGGATCCTGTTCAAGTTGCTTGTGGGGCTGCTCATACTGTTATAGTTGCACATAATGGATATAAATTGTGGTCATGGGGACGAGGAAGAAGCGGAGTTCTTGGAAATGGTAAGACAGTCGATTGTTTTACTCCCACGATCGTCTTATGGCCTCCACTTGACGAGGATTTCAATCAAGAGGGAACTAAAACCAAAAGCGAGGAAGATAAAGTTGAACAAAATAAACCCGAGGAAGTAACCGAAGAAAACAAAAAGCTGTTAATAGCTATGGAGGAAATAAAACTTCTTCAAGAGAAATTATCTATCATGGAACGGTATGCAAACTTTCTTCATGGCTCAATATTTGGAAAACCTTTCCAAGAGGGAGATATCCCACTCTCATTGGGAAATTCTGCTACTCTCGACATTGCTAAGGAATGGGAAAGCATGTTAGAGTCGACAGATCGCCCAAATCTTTTAAGGTTGGAGTGCTATAATCTGAGAGGAACTGGACCTATCATTAATCAGGTGGTGTAG 2301 45.5 MESVASTSSPHHVPRFKPSQAVADRIVRALHHDLRLLHRSGSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRRVFHQQFFQVKERASSSVTVVDMEDGSTCPVCLDDMKKKDRVVACSTCRNLVHEDCFLRWKRSKGRRNVSCVVCRARWKDTKNQQNFLVRKAMEDSGTRPSAGKSAGNVVAIAAGEAHTLLLTGDGRMYSWGRGMFGRLGTGAEADELFPVRVKLGSEEENLKVMAIAAGSYHSLALADDGSVWCWGYNIYGQLGFDGGNSATPCLLKQFLELESPESLTEESGSKSKESLKICDIKAGGLISFAIDDLGALWMWGNCPKPNGENEAGLSYVSSFTPSPVWEFHGHTVVKVACGNEHIVALVSVGETYNNGEDLVCYSWGDNSHGQLGLGDRDGRPHPQIIETFNEASPWAVYEVACGAFHTALLSRRKRPCDGLESVCWTFGLGENGQLGHGTTQNELLPKPVKELPQSVSLISVDCGLFHTSVVSSGGDLWSWGMERGLGLCPDASFTGTDTGDAISPLSFFCNGSESPKFLDPVQVACGAAHTVIVAHNGYKLWSWGRGRSGVLGNGKTVDCFTPTIVLWPPLDEDFNQEGTKTKSEEDKVEQNKPEEVTEENKKLLIAMEEIKLLQEKLSIMERYANFLHGSIFGKPFQEGDIPLSLGNSATLDIAKEWESMLESTDRPNLLRLECYNLRGTGPIINQVV 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24807987 24813646 + CrPI670011_08g011600.1 Cre08g1160 506078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1160 766 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 413 423 IPR000408 -
Cre08g1160 766 SUPERFAMILY RING/U-box 133 207 - -
Cre08g1160 766 SUPERFAMILY RCC1/BLIP-II 474 643 IPR009091 -
Cre08g1160 766 MobiDBLite consensus disorder prediction 653 673 - -
Cre08g1160 766 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 551 IPR000408 -
Cre08g1160 766 Coils Coil 674 694 - -
Cre08g1160 766 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 303 371 IPR000408 -
Cre08g1160 766 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 302 IPR000408 -
Cre08g1160 766 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 490 IPR000408 -
Cre08g1160 766 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 477 487 IPR000408 -
Cre08g1160 766 MobiDBLite consensus disorder prediction 650 673 - -
Cre08g1160 766 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 372 426 IPR000408 -
Cre08g1160 766 ProSiteProfiles Zinc finger SWIM-type profile. 54 84 IPR007527 GO:0008270(InterPro)
Cre08g1160 766 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 289 299 IPR000408 -
Cre08g1160 766 Gene3D - 205 435 IPR009091 -
Cre08g1160 766 Gene3D - 436 690 IPR009091 -
Cre08g1160 766 SUPERFAMILY RCC1/BLIP-II 222 528 IPR009091 -
Cre08g1160 766 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 229 329 IPR051210 -
Cre08g1160 766 Pfam Ring finger domain 150 197 IPR001841 -
Cre08g1160 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 204 IPR013083 -
Cre08g1160 766 PRINTS Chromosome condensation regulator RCC1 signature 305 321 IPR000408 -
Cre08g1160 766 PRINTS Chromosome condensation regulator RCC1 signature 249 265 IPR000408 -
Cre08g1160 766 PRINTS Chromosome condensation regulator RCC1 signature 611 632 IPR000408 -
Cre08g1160 766 PRINTS Chromosome condensation regulator RCC1 signature 372 388 IPR000408 -
Cre08g1160 766 PRINTS Chromosome condensation regulator RCC1 signature 541 559 IPR000408 -
Cre08g1160 766 PRINTS Chromosome condensation regulator RCC1 signature 286 299 IPR000408 -
Cre08g1160 766 PRINTS Chromosome condensation regulator RCC1 signature 413 429 IPR000408 -
Cre08g1160 766 Pfam Regulator of chromosome condensation (RCC1) repeat 247 299 IPR000408 -
Cre08g1160 766 Pfam Regulator of chromosome condensation (RCC1) repeat 501 547 IPR000408 -
Cre08g1160 766 Pfam Regulator of chromosome condensation (RCC1) repeat 302 368 IPR000408 -
Cre08g1160 766 Pfam Regulator of chromosome condensation (RCC1) repeat 438 487 IPR000408 -
Cre08g1160 766 Pfam Regulator of chromosome condensation (RCC1) repeat 618 643 IPR000408 -
Cre08g1160 766 ProSiteProfiles Zinc finger RING-type profile. 151 197 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1160 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1160 Cre-Chr8:24807987 Cre11g1345 Cre-Chr11:14407306 4.70E-23 dispersed
Cre08g1160 Cre-Chr8:24807987 Cre07g0710 Cre-Chr7:5045828 2.30E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33