Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1165 ATGAGCACTAAACAAATGAGCCCTTCAGAAACAGAGTCCTCCACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCCAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCGTTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTGCTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCGAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCAGAATTGGAATCGGCTGCGTGGCTTTACACGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGACAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA 666 44.44 MSTKQMSPSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSVKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNTNLNNINTNSSSAFSDELTEIVELPSLGTSYDGGGGEFVFVDSELESAAWLYTPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWDY 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24893628 24894293 - CrPI670011_08g011650.1 Cre08g1165 506083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1165 221 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1165 221 Pfam AP2 domain 40 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1165 221 SMART rav1_2 41 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1165 221 MobiDBLite consensus disorder prediction 1 43 - -
Cre08g1165 221 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1165 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 160 IPR051032 -
Cre08g1165 221 CDD AP2 42 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1165 221 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Cre08g1165 221 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1165 221 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1165 221 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677(InterPro)
Cre08g1165 221 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1165 Cre-Chr8:24893628 Cre09g0167 Cre-Chr9:1934111 5.50E-41 dispersed
Cre11g1934 Cre-Chr11:31117500 Cre08g1165 Cre-Chr8:24893628 1.40E-57 wgd
Cre04g1510 Cre-Chr4:33815584 Cre08g1165 Cre-Chr8:24893628 2.70E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54202 PF00847 AP2 1.20E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1165 K09286 - csv:101206242 339.732