Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1168 ATGGCCAGAATTGCAATGGGAAGCATCGGCGAGGCCTCCCAGCCCGACTGCATCCGAGCCCTCATTGTCGAGTTCATTGTCACTTTCCTCTTCGTCTTCGCTGGCGTCGGATCAGCCATGGCTGCCAATGCGTTATTGGCAAACACACTAGTGGGTTTATTTGCCGTTGCCGTCGCACATGCGCTTGTAGTGGCTGTGATGATTTCCACAGGTCATATTTCCGGTGGCCACCTCAACCCCGCCGTCACTCTTGGTCTCCTTTTGGGTGGCCACATCACAGTTGTTCGATCCGCTCTATATTGGATCGTTCAGTTACTGGCAGCTTCAGCTGCTAGCTTTTTGTTAACGTACCTCACCGGAGGCTTGGTCACTCCAATTCATACATTAGCAAGCGGAGTTGGTTATATTCAGGGAGTGATATGGGAGATTATTCTAACCTTTTCCTTGCTATTCACTGTGTATGGAACAATTGTTGACCCAAAAAAGGGGGCTCTTGATGGGCTGGGTCCATTGCTGACTGGGTTTGTGGTGGGGGCCAACATCTTGGCTGGTGGGGCTTTTTCAGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCAGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAATTTTCTCATTCAAAGATCTCATGTGCCTCTACCTAGGGAGGAAGATGGCTATTAG 744 50.27 MARIAMGSIGEASQPDCIRALIVEFIVTFLFVFAGVGSAMAANALLANTLVGLFAVAVAHALVVAVMISTGHISGGHLNPAVTLGLLLGGHITVVRSALYWIVQLLAASAASFLLTYLTGGLVTPIHTLASGVGYIQGVIWEIILTFSLLFTVYGTIVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFLIQRSHVPLPREEDGY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24914205 24915321 - CrPI670011_08g011680.1 Cre08g1168 506086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1168 247 SUPERFAMILY Aquaporin-like 14 241 IPR023271 -
Cre08g1168 247 FunFam Probable aquaporin TIP1-1 2 244 - -
Cre08g1168 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g1168 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g1168 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g1168 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g1168 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g1168 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g1168 247 PANTHER AQUAPORIN-8 1 237 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cre08g1168 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Cre08g1168 247 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Cre08g1168 247 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1168 Cre-Chr8:24914205 Cre09g0171 Cre-Chr9:1957490 2.50E-66 dispersed
Cre08g1168 Cre-Chr8:24914205 Cre04g1037 Cre-Chr4:28958360 1.40E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1168 K09873 - csv:101205380 447.973