Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1173 ATGGTGAATTCCGTGGTGGGGCGTGCTACGAGCGATATGTTGATTGGTCCAGATTGGGCGATGAACATCGAGATCTGTGATATGTTGAACCATGACCCTGGGCAAGCGAAAGATGTTGTTAAAGGTATAAAGAAACGCCTTGGAAGCAAGAACGCAAAAGTTCAACTTCTTGCCCTGACGCTGTTGGAAACAATCATTAAGAATTGTGGGGACATTGTTCATATGCATGTGGCTGAGAAGGGTCTTCTTCATGAGATGGTAAAAATGGTGAAAAAGAAGCCTGATTTTCGCGTCAAAGAGAAGATATTGATTCTGATAGATACTTGGCAAGAAGCTTTTGGAGGCCCTAGGGCAAGATATCCACAGTATTATGCCGCATACCAGGAATTGTTGCGTGCTGGGGCAGTTTTCCCCCAGAGATCTGAGAGCTCTGCACCTGTATTCACCCCCCCACAAACACAACCTTTGTCATCGTATCCTCCTAATCTACGGAATCCCGATCATAATCAGCAAGATGGTGCCGAGACCTCTGCTGAGTCTGAGTTTCCGACCTTAAGCCTGACTGAAATTCAAAATGCTCGTGGAATTATGGATGTTCTTTCAGAAATGCTTAATGCATTAGAACCAGGGAATAAAGAGGCTATCAGACAGGAAGTTATTGTTGACTTGGTTGACCAGTGCCGTACTTACAAACAGAGGGTGGTTCACCTTGTTAACTCAACTGCGGATGAGTCACTACTTTGCCAAGGACTTGCACTTAATGATGATCTTCAGAGGCTACTTGCTAGGCATGAATCTATTTCTTCTGGAAATCCTGTTGTTCAGAAAGCAAAGTCTGAATCTGCTACAACACTCGTCGATGGAGACCGGCCTCTTATTGACACTGGTGATAACAGCAAACAGCCTGACACAAAAGCTGCCGCGTCAAATGCCAGTGAAGGTTCTCAAACCCTGAACCAGTTATTGCTTCCTGCACCAGCTGCAACTAATGGGGGGCCTCCTCCAGGCAGAGTTGAACCCAATGTGGACCTGCTGAGCGGTGACTTCAATTCACCCAAGGCAGAGACTTCATTGGCTCTTGTTCCTCTTGGAGAGCAACAACCCAATCCTCCTGCATCGGATCAAAATGCTCTTGTTCTATTTGATATGTTCTCTGATGGTAACAATGCCTCTAATCCTGCAAATCCCCCTCCTATCAATCCCGGTGGGCAACTCCCACACCCACATGCTTCCCAATTTCAACAGCAGCAACCGCTGCCGCAGCAGCAGCAGCAGCCTAATGTTCATTCCCCACAAGCTGGATTATATCCGAATGGGAATGTCATGAACATGGGTTCGCCTAATTATGAGCAATCGATGTACATGCAGGGCCCAGGTTCTGCATGGAATGGTCAAACTTCTCCTCAGCAGCAACAGCAACCCCATTCACCTGGCTATGGTTCGCAAACTGGTTCATTGCCGCCTCCACCCTGGGAAGCTCAGTCTTCTGATGATGGTAGCCCAGTATCAGGCTCTCATTACCCTCACCCAATGCAGGTTACTACTCAGGTTATCGTCTCACACGGACTCAGTGGACATCCCCAAGGACCTCAATCAATGGGGAACGAGGTTGTAGGTATAGGTATGTACATCCAGCCAATAACGAGTGGTCAAATGTCTAACATGAATAGCCATGTTAATCCAAACCATCAGTTGGGTATGCCAATGCCTCCGCAGATCCCTGGCATGCAAAATATGGGTATGCCGACGCCTCCGCAGATCCCCGGCATGCAAAATATGGGTATGTCGACGCCTCCGCAACATCCGCAACATCCACAAGCTAACCAGATGACACAACCCTATTACCCTCAACAGATGTATGGCAACCACAACCAATACAACCCTGGCTATGGCTATGGTCATGGTCAACCTCAGGTTCCCCAATATCTTGAGCAGCAAATGTATGGCCTGTCCGTTAGAGATGATATGAGTATGAGCAATTCGTCTTCTCAGGCTTCTGCTTTATCTTATGTGCCTCCCATGAAGCCAGCCAATAAACCAGAGGATAAACTGTTCGGCGACCTTGTCGACATTGCGAAATTCAAACCCGGGAAATCGACTCCTGGTAGAGCTGGTAGCATATTAGAATCAAAAGACAGTTTTTTTGGTACCGGTTGCAGTTTGTCGGCCGGTAATTTTGCTGGTTTGGGAATTCTAGGCTTGAAGCTGCTTGTTTTGTCTGGGAGAATCTATAATGCAGTTCTTATATTTTTCTGGATTCATTATAGATTCTCTCAGGCCTCAAGAGCAAGGTTGTTCAAGGAGTACAAAGAGGTTCAAAGAGAAAAGGTAGCAGATCCAGATATTCAATTGGTTTGTGACGATTCTAATATTTTTAAATGGACTGCCCTAATCAAGGGACCGTCAGAGACTCCTTTTGAAGGTGGTGTCTTCCAGCTTGCCTTCTCCGTACCTGAGCAATACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTCCATCCAAATGTTCATTTTAAGACGGGTGAGATCTGCCTAGATATATTGAAGAATGCATGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATTGCTTTGATGGCTCATCCCGAACCTGATAGCCCCCTAAACTGTGATTCTGGAAACCTTCTGCGTTCGGGCGATGTCCGAGGATATCAATCAATGGCAAAGATGTACACAAGGCTTGCTGCCATGCCCAAAAAGGGTTGA 2745 46.59 MVNSVVGRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRLGSKNAKVQLLALTLLETIIKNCGDIVHMHVAEKGLLHEMVKMVKKKPDFRVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSESSAPVFTPPQTQPLSSYPPNLRNPDHNQQDGAETSAESEFPTLSLTEIQNARGIMDVLSEMLNALEPGNKEAIRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRLLARHESISSGNPVVQKAKSESATTLVDGDRPLIDTGDNSKQPDTKAAASNASEGSQTLNQLLLPAPAATNGGPPPGRVEPNVDLLSGDFNSPKAETSLALVPLGEQQPNPPASDQNALVLFDMFSDGNNASNPANPPPINPGGQLPHPHASQFQQQQPLPQQQQQPNVHSPQAGLYPNGNVMNMGSPNYEQSMYMQGPGSAWNGQTSPQQQQQPHSPGYGSQTGSLPPPPWEAQSSDDGSPVSGSHYPHPMQVTTQVIVSHGLSGHPQGPQSMGNEVVGIGMYIQPITSGQMSNMNSHVNPNHQLGMPMPPQIPGMQNMGMPTPPQIPGMQNMGMSTPPQHPQHPQANQMTQPYYPQQMYGNHNQYNPGYGYGHGQPQVPQYLEQQMYGLSVRDDMSMSNSSSQASALSYVPPMKPANKPEDKLFGDLVDIAKFKPGKSTPGRAGSILESKDSFFGTGCSLSAGNFAGLGILGLKLLVLSGRIYNAVLIFFWIHYRFSQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMAKMYTRLAAMPKKG 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24968136 24980953 - CrPI670011_08g011730.1 Cre08g1173 506091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1173 914 SMART VHS_2 2 134 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cre08g1173 914 Pfam Ubiquitin-conjugating enzyme 764 903 IPR000608 -
Cre08g1173 914 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 835 851 IPR023313 -
Cre08g1173 914 Pfam VHS domain 3 128 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cre08g1173 914 MobiDBLite consensus disorder prediction 142 184 - -
Cre08g1173 914 Pfam GAT domain 196 269 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cre08g1173 914 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Cre08g1173 914 MobiDBLite consensus disorder prediction 297 324 - -
Cre08g1173 914 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 760 910 IPR000608 -
Cre08g1173 914 SMART ubc_7 763 910 - -
Cre08g1173 914 FunFam TOM1-like protein 2 183 273 - -
Cre08g1173 914 CDD UBCc 764 905 IPR000608 -
Cre08g1173 914 MobiDBLite consensus disorder prediction 384 509 - -
Cre08g1173 914 ProSiteProfiles GAT domain profile. 181 269 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cre08g1173 914 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cre08g1173 914 PANTHER TOM1-LIKE PROTEIN 1 705 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Cre08g1173 914 FunFam protein PEROXIN-4 isoform X1 758 909 - -
Cre08g1173 914 CDD VHS 2 132 - -
Cre08g1173 914 MobiDBLite consensus disorder prediction 269 350 - -
Cre08g1173 914 MobiDBLite consensus disorder prediction 407 509 - -
Cre08g1173 914 CDD GAT_GGA-like_plant 189 267 - -
Cre08g1173 914 FunFam TOM1-like protein 2 1 148 - -
Cre08g1173 914 Gene3D - 184 274 IPR038425 -
Cre08g1173 914 Gene3D Ubiquitin Conjugating Enzyme 756 909 IPR016135 -
Cre08g1173 914 Gene3D - 1 148 IPR008942 -
Cre08g1173 914 SUPERFAMILY GAT-like domain 140 271 - -
Cre08g1173 914 SUPERFAMILY UBC-like 755 910 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1173 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1173 Cre-Chr8:24968136 Cre09g2444 Cre-Chr9:43785547 1.10E-26 dispersed
Cre02g1766 Cre-Chr2:30960495 Cre08g1173 Cre-Chr8:24968136 4.60E-30 transposed
Cre04g0399 Cre-Chr4:14035237 Cre08g1173 Cre-Chr8:24968136 1.70E-34 transposed
Cre04g0400 Cre-Chr4:14054658 Cre08g1173 Cre-Chr8:24968136 2.70E-14 transposed
Cre08g0583 Cre-Chr8:18710741 Cre08g1173 Cre-Chr8:24968136 5.60E-81 transposed
Cre09g1880 Cre-Chr9:37391681 Cre08g1173 Cre-Chr8:24968136 2.40E-06 transposed
Cre10g2361 Cre-Chr10:37739545 Cre08g1173 Cre-Chr8:24968136 4.80E-74 transposed
Cre11g1294 Cre-Chr11:12055601 Cre08g1173 Cre-Chr8:24968136 3.80E-90 transposed
Cre11g1940 Cre-Chr11:31198413 Cre08g1173 Cre-Chr8:24968136 9.80E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003825 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 45