Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1199 ATGACGGCACCGGTGTCAGTTGATGGGAAAGTGAAGAAGAATCTTGAGAATTTGGTGTCTGCTACTAAGTCTTTGAAGGCTAGTTTAGAGAAATCTAGGGCTTTAGGGTTTGCGTTGCAGAAAGCTGGGCCGAGATTGGAGGAGATTAGGCAAAGATTGCCAACTTTAGAAGCGGCGGTTCGGCCTATCCGTGCTGATAAGGAAGCCCTTGCCGCCGTCGGTGGCCATATACATCGGGCTGTTGGCCCTGCGGCGGCGGTGCTTAAGGTTTTTGATGCTGTTCATGGCCTTGAAAAGTCTCTGTTATCGGACCCGCGGAATGATCTCCCTGGATATTTGTCGGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTAGGAGATAACTGTGGACTGGCAATCCAGTGGTTGGAGGACATTGTTGAGTATTTAGAAGATAATACTGTTGCTGATGAGAAATATCTAGCGAGTTTGAAGAATTCGTTGAAAAATCTTAGGGATTTGCAGAGTGATGAGGAGAGGACTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGATAAACTCGAGAACGAGTTTAGGCGGCTTTTAACGGAGCATAGTGTACCCCTTCCCATGTCTTCCTCGGCGTCTCTCGGTGAACAAGCTTGCATTGCTCCATCTCCATTGCCTGTGACTGTAATTCAGAAATTGCAAGCCATTCTTGGGAGATTGATTGCTAATAAACGACTCGAGAGATGCATATCGATTTATGTTGAAATTCGTAGTTCTAATGTTCGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCGGTTTCCGAGTTCAATGATGTGCAGAGCATTGAAGGGTACATTGCAAAATGGGGGAAGCATTTGGAGTTTGCAGTGAAACACTTGTTTGAGGCTGAGTTCAAGCTTTGTAATGACGTTTTCGAGAGGATAGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCAACTCAAGCAGGTATACTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAAAGCAAGAATGATCCTATTAAGCTATTGAAGTTGTTAGATATATTTGCATCCTTGAACAAACTGAGACTAGACTTCAATAGGCTTTTTGGCGGGGCGGCCTGTTTGGAAATTCAAAACTTGACTAGGGATCTCATTAAGAGGGTTATCGATGGTACAGCCGAGATTTTCTGGGAGCTTCTAGTTCAGGTGGAGCTCCAGAGGCAAAATTCTCCACCTTTAGATGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGTAATAAACTGCTCAGTGATGATTATCGGCCGATCCTGACCCAAGCCCTCGTCATTCACCGGAGTTGGAAGAAAGAAAAGTTCCAAGAGGGTCTTCTTGTCAATGAGGTAACAAACCTTGTTAAAGCCATTGAGCAGAATCTGGAGACTTGGATCAAGGCTTATGAAGATTCTACCTTGTCAAATTTTTTCGCTATGAATAATCATTGGCATCTATACAAGCACCTCAAAGGAACGAAAGTCGGAGAACTAATGGGAGATAAACTAAAGGAACACGAACAATACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTAGCCATTTAAGCAGGGAGGGTTTGATTATGTTTTCAGGTGGGAGAGCTACTGCTCGTGATCTCGTCAAGAAACGTCTAAAGACATTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAGTCAACCTGGGTTATATTTGACAAAGAATTGAGGGAGAAGACATGTCAACTTATAGTTCAAACCATCGTGCCCGTTTATCGCAGTTACATGCAGAATTACGGCCCCCTGGTCGAGCAAGACGCGAGTTCCAGTAAGTATGCAAAGTACACCGTGCAGAATCTGGAGAAAATGTTGCTGTCCCTATATCAGCCAAAGCCACTCAGGTACAGTAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGCGCAATGGATCATCGTCGTTCCAACTCCATGGTTTTGTAA 2049 43.92 MTAPVSVDGKVKKNLENLVSATKSLKASLEKSRALGFALQKAGPRLEEIRQRLPTLEAAVRPIRADKEALAAVGGHIHRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADEKYLASLKNSLKNLRDLQSDEERTRLDGGLLNAALDKLENEFRRLLTEHSVPLPMSSSASLGEQACIAPSPLPVTVIQKLQAILGRLIANKRLERCISIYVEIRSSNVRASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVIDGTAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLVNEVTNLVKAIEQNLETWIKAYEDSTLSNFFAMNNHWHLYKHLKGTKVGELMGDKLKEHEQYKDYYAAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSTWVIFDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTVQNLEKMLLSLYQPKPLRYSSLKVRQTSGKFSNGAMDHRRSNSMVL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25253209 25255257 + CrPI670011_08g011990.1 Cre08g1199 506117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1199 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
Cre08g1199 682 Coils Coil 12 32 - -
Cre08g1199 682 Gene3D Exocyst complex component Exo70 133 654 - -
Cre08g1199 682 Coils Coil 155 175 - -
Cre08g1199 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 25 649 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Cre08g1199 682 Pfam Exocyst complex component Exo70 N-terminal 82 199 - -
Cre08g1199 682 Pfam Exo70 exocyst complex subunit C-terminal 290 645 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cre08g1199 682 FunFam Exocyst subunit Exo70 family protein 137 654 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1199 K07195 - - csv:101207478 1284.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1199 Cre-Chr8:25253209 Cre09g0142 Cre-Chr9:1679834 2.20E-181 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2361 . 12 653 EXO70 exocyst subunit family AT5G03540 75.9 1.1e-283 972.6
Cre04g1139 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 2.8e-266 914.8
Cre04g1139 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 3.1e-299 1024.2
Cre05g2361 . 14 653 EXO70 exocyst subunit family AT5G52340 74.4 1.6e-271 932.2
Cre04g1139 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.4e-176 615.9
Cre05g2361 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 3.2e-165 578.9
Cre03g0365 . 1 623 EXO70 exocyst subunit family AT5G58430 67.0 1.4e-246 849.4
Cre03g0365 . 1 622 EXO70 exocyst subunit family AT1G07000 52.5 3.9e-174 608.6
Cre07g1891 . 60 673 EXO70 exocyst subunit family AT5G13150 53.6 1.0e-175 614.0
Cre09g1672 . 111 722 EXO70 exocyst subunit family AT5G13990 54.5 6.5e-189 657.9
Cre07g1809 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 1.1e-216 750.0
Cre07g1809 . 9 607 EXO70 exocyst subunit family AT1G54090 61.8 3.3e-208 721.8
Cre07g1809 . 9 608 EXO70 exocyst subunit family AT3G14090 64.2 2.0e-218 755.7
Cre03g1627 . 27 664 EXO70 exocyst subunit family AT5G50380 62.0 2.2e-226 782.3
Cre03g0668 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.2e-211 733.4
Cre08g1199 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 3.0e-295 1011.1
Cre02g1670 . 58 596 EXO70 exocyst subunit family AT3G55150 50.1 1.4e-145 513.8
Cre02g1670 . 31 596 EXO70 exocyst subunit family AT2G39380 50.1 5.1e-148 521.9
Cre10g2192 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.5e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005903 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39