Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1221 ATGTATAACGGTATTGGTTTACAAACTCCGAGAGGGTCTGGCACTAATGGGTACATTCAGACAAACAAGTTCTTTGTGAGGCCGAAGACCGGAAAGGTTGCTGAAAGCTCTAGAGGATTCGAAGAAGATCAGGGCACTGCTGGAGTTTCAAAGAAACCGAATAAAGACATTCTCGAACACGATCGCAAGCGTCAGATTGAACTCAAACTTGTCATACTTGAGGACAAGCTCACTGACCAAGGTTATACCATGGATGAAATTTCCGAGAAGTTAAAGGAGGCTCGTGAGACTTTGGAAGCTGCTTCAGAGGAAAAAGATGGAGCTTCTGCCATCGTACTTGCAGATAAGAGGGTATCAGATACACAGACTCACCAAATTGCTGCAAGAAAGGAGGAGCAGATGAAAACATTTAGAGCTGCTCTTGGGTTGGGCTCATTGGACGATACTGAACAGGCTAAAGAAGAGATTTCTGATCCATCAAGAAATAGAAGAGATGGTCAGAATGCTGATATTAAGCGTCATGAGAAGTCTGAACATTCTTTCTTGGATAGAGAATTGAACTGGAAAAAGCATGGCACTGAAGATCAGTATGATGATAAGGATGACAAAAAAAGGGTTTCGAAAGAGTTGAAAGGTCATCAGAAGGATAGAAAAAGAAGGTCCAAGGATGATTCTTCTGACACCAATTCTGGTGAGCGTAAGGGAACCAAGAAGAACTTGAGAGATAGTATAAAGAATGATTCTGAAAGTGACCTTGACAGTGATGTTGGCAACAAATATGTCGCGGCAAGGAAGTCTACAAAAAATAGAAGGCACGATAGTGATGATTCTTCTGATACTGATTCTGGTGGTGAGCGCAAGGGAACCAAGAAGCACATGAGAGATAAACGGAGAGATGATCCTGAAATTGACTCAGACAGCGATTTTGACCAGAAATATATCACCTCAAGGAAGCATAAGAAAAACAGAAGGCATGATAGTGATGATTCTTCTGATACTGATTCTGGTGGAGAGCACAAGAAAACCAAGAAGAATATGAGAAATTATCAAAGAGATCATGGAAGTGATCCCGACAGTGATGTTGATAAGAAATACACCTCAAAGAAGCAGGCGAAAAACACAAGGCATGATAGTGATGATTCTGATTCATTTACAGATGGTGATAAGTTTGGGATGGGCAGCCACAAGAAAGGATCTGGTAGACATAAAAGTCAAAAGGTGAAAAAGCAAAGAAGCCGGAAACAGGAGTCTACTGATGAATCCAATTCTGACAGTGGGATTGATGATAAACGCAGAAAACTGAAGCACAAAAACCAGCATGGTAAAAGATATGGGGTAGAAAGTGACAGCTCTGACCATGACAGTTCTGATTCTGATGTAGGTCGCAAGAAGAGTACGCATAGGCATGACAGCAAGCGTACAGGAAAGAGGAGGGTAGATAGTGAATCCGATTCTGAAAAGTTGAGAAAGCATCCTAAGAAAGATGTTGGCAGACACGGACATGATATTGATGATGAAAAAAGTGGTGATAACAGCTCTACCAGTGATGAAATAGTGAAGAGGCGCAGAGGTAGGAGGCACAATACTGATGATGAATCTGAAGAAGGTGAATATTTTGGTAGAAGTGGTAGGGTAGACACAAAGGGAAAGAAAATAGCTGCTAAAAGGCAACATGATGACAGTGATAATTCTGATGATAGCCTAGCAGTTGGTAGAAAGGGCAATGATAAACACAAGAGAGCTAAGAAATATTCGACGGGTGATGGCTTTGGTCTTGAGAAGGGAGTAAAATCAAGCAATGGAGCTCGTGCAAGAGGAAAAGGGAACTTAAATCATTCAGAAGGTAGGAGCCACGATACCAATGATAAATCTGAAGAAGAAGAAGGTGAATATTTTGATAGAAGTGGAAAGCTAGCTACAAAAGGTAAAATAGATGCTAAAAGGCAACACGATGACAGCGATAATTCTGATGATAGCCTTGCAGTTGATAGAAAGGGCAATGATAAACACAAGAGAGCTAAGAAATATTCTTCGGGTGATGATTCTGATCTAGAGAAGGGAGTAAAATCAAGTGGTGGAGCTCGTGAAAAAGGAAAAGGGAACTTTAATCATGCAGATGGTTTGGACAAGTTTAAGAAAGATTCCATCAATGAGTTCAGCCATGCACATACAGATACAATGAAAAGCAAGAGAAAGTTTGATGAAGGTGGTGAAAATGAGCAGCAGCTAGAGGCAAAGCCTATAAATCGCAATTCTACAAGAGAGTCAGATTTCCATGGCAACCCCAAGAAAGATTTCAAAAATGATTCTGAATCAATCCGAAGAGCACACAGTGGTCGGTATGATGAAACAAGGGATCGGCGGTACAGGGAAGATCCCAAAATTGACTCTGAATCAAACGCTAGATCACGCTATAGTGCACGTGATGAGGGTGACGACAGAAAGTCAACTCGAACAGGAAGCAGATATACTGAAGAAACAGAGCATGGAAGTAGACATCACCGCAAGGCTAATGAGTCTCATCATCGCAGCAGGGCTGATCAAGATACTGAAGAGGAAAAAAGGCACAGCAGATATGAGGAGCCTAGAGGGAGAAAACACGAAAGAGACGATGGTCTAAAATCGAGCAGGGAAGTTGAAAGAGGGGAGTATCAACCAAGTAGCAGGCAGAGATCTGAGAAAGATTATGAAACTAGAGAATCTACAAGAGATAGGGATGATTCCAGAAAGAGGGCCAGATATGATTCTCGATCAAGCAGACGTGATAATTATTAG 2775 41.55 MYNGIGLQTPRGSGTNGYIQTNKFFVRPKTGKVAESSRGFEEDQGTAGVSKKPNKDILEHDRKRQIELKLVILEDKLTDQGYTMDEISEKLKEARETLEAASEEKDGASAIVLADKRVSDTQTHQIAARKEEQMKTFRAALGLGSLDDTEQAKEEISDPSRNRRDGQNADIKRHEKSEHSFLDRELNWKKHGTEDQYDDKDDKKRVSKELKGHQKDRKRRSKDDSSDTNSGERKGTKKNLRDSIKNDSESDLDSDVGNKYVAARKSTKNRRHDSDDSSDTDSGGERKGTKKHMRDKRRDDPEIDSDSDFDQKYITSRKHKKNRRHDSDDSSDTDSGGEHKKTKKNMRNYQRDHGSDPDSDVDKKYTSKKQAKNTRHDSDDSDSFTDGDKFGMGSHKKGSGRHKSQKVKKQRSRKQESTDESNSDSGIDDKRRKLKHKNQHGKRYGVESDSSDHDSSDSDVGRKKSTHRHDSKRTGKRRVDSESDSEKLRKHPKKDVGRHGHDIDDEKSGDNSSTSDEIVKRRRGRRHNTDDESEEGEYFGRSGRVDTKGKKIAAKRQHDDSDNSDDSLAVGRKGNDKHKRAKKYSTGDGFGLEKGVKSSNGARARGKGNLNHSEGRSHDTNDKSEEEEGEYFDRSGKLATKGKIDAKRQHDDSDNSDDSLAVDRKGNDKHKRAKKYSSGDDSDLEKGVKSSGGAREKGKGNFNHADGLDKFKKDSINEFSHAHTDTMKSKRKFDEGGENEQQLEAKPINRNSTRESDFHGNPKKDFKNDSESIRRAHSGRYDETRDRRYREDPKIDSESNARSRYSARDEGDDRKSTRTGSRYTEETEHGSRHHRKANESHHRSRADQDTEEEKRHSRYEEPRGRKHERDDGLKSSREVERGEYQPSSRQRSEKDYETRESTRDRDDSRKRARYDSRSSRRDNY 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25439090 25443588 - CrPI670011_08g012210.1 Cre08g1221 506139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1221 924 MobiDBLite consensus disorder prediction 841 924 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 441 465 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 30 56 - -
Cre08g1221 924 PANTHER SERINE/ARGININE REPETITIVE MATRIX 2 1 921 IPR051372 GO:0005634(PANTHER)
Cre08g1221 924 MobiDBLite consensus disorder prediction 216 254 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 396 410 - -
Cre08g1221 924 Pfam cwf21 domain 58 100 IPR013170 -
Cre08g1221 924 MobiDBLite consensus disorder prediction 411 432 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 1 20 - -
Cre08g1221 924 Gene3D - 58 102 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 267 315 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 475 574 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 322 395 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 148 209 - -
Cre08g1221 924 Coils Coil 84 111 - -
Cre08g1221 924 CDD cwf21_SRRM2-like 53 98 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 609 741 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 141 924 - -
Cre08g1221 924 MobiDBLite consensus disorder prediction 750 834 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1221 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g265 . . . . . . . . Cmo05g00668 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00585 Cpe11g00563 . . . . . . . . Cla08g01279 Cam08g1737 Cec08g1319 Cco08g1440 Clacu08g1434 . Cre08g1221 . Csa02g02337 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005994 2 3 0 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 38