Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre08g1226 | ATGGCTGTCAAAACAGCTCAATCATTTAGAGATCGGACGCTGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCACGGGACCAACTGGACCAAGTGCTGTTTCAAAATCAGAAGAGCAGCGCTCTTCTGTGGCTCTACAGTCTGAATTTAATAAGAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACATCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACATTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTTCTGACAATGCGAACAGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTTCGCCAGCGCCCATTAGCATCTAGGTCGGCTGCTGGTGCCCCAAGTGCACCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCCAAAACATCTCCTGGGAAGCAGGTGGATGGGGAGGGTCAACCATTATTGCAGCAGCAACAGCAACAGCAACAGATGGTTCCCTTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGCTGGACAATAGGCGTGCATGGACGCAACAGCCTGTTGGAACAGAACATGTCACTGTGAGTGCTGGCAAATGCCTGACTTATCGGTTGAATAATTTGGGCAATTTGTCAAATAGCTGGATCGATGAGAACATGGACGATACTCTCGCAAATGTGGAGGGAGCGCAGGGAGCTTTGCTCAAGTATCTAAGCAGTATATCATCAAACAGACGGAAGATCTGGATTCTAGTCAAGTATAATGTTGATAATGTGTCAGTTCGTGTTTATGCCTTCAACTTCTCTTCTAATTTTGGGAACGCATCGCTGAAGAACTCAAACGCATCAAATTACTACAGTTTGAAGAGCACTCTTTCTTTATCGGTCTCCAGAAGGATGGAATGCCTTAAATGA | 1245 | 43.37 | MAVKTAQSFRDRTLEFQNITERLKKSFSSGTGPTGPSAVSKSEEQRSSVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGAPSAPPPPWAKASTSFSKTSPGKQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRLDNRRAWTQQPVGTEHVTVSAGKCLTYRLNNLGNLSNSWIDENMDDTLANVEGAQGALLKYLSSISSNRRKIWILVKYNVDNVSVRVYAFNFSSNFGNASLKNSNASNYYSLKSTLSLSVSRRMECLK | 414 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 25485306 | 25490170 | + | CrPI670011_08g012260.1 | Cre08g1226 | 506144 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre08g1226 | 414 | MobiDBLite | consensus disorder prediction | 170 | 190 | - | - | |
| Cre08g1226 | 414 | SUPERFAMILY | t-snare proteins | 52 | 289 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
| Cre08g1226 | 414 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 246 | 289 | IPR000727 | - | |
| Cre08g1226 | 414 | SMART | tSNARE_6 | 241 | 306 | IPR000727 | - | |
| Cre08g1226 | 414 | MobiDBLite | consensus disorder prediction | 24 | 46 | - | - | |
| Cre08g1226 | 414 | CDD | SNARE_syntaxin5 | 249 | 363 | - | - | |
| Cre08g1226 | 414 | MobiDBLite | consensus disorder prediction | 209 | 242 | - | - | |
| Cre08g1226 | 414 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 6 | 25 | IPR021538 | - | |
| Cre08g1226 | 414 | MobiDBLite | consensus disorder prediction | 168 | 242 | - | - | |
| Cre08g1226 | 414 | Gene3D | - | 50 | 296 | - | - | |
| Cre08g1226 | 414 | Pfam | SNARE domain | 326 | 362 | IPR000727 | - | |
| Cre08g1226 | 414 | PANTHER | SYNTAXIN | 54 | 361 | IPR045242 | GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre07g0761 | Cre-Chr7:5780108 | Cre08g1226 | Cre-Chr8:25485306 | 1.40E-66 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre08g1226 | K08490 | - | csv:101203633 | 511.916 |