Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1226 ATGGCTGTCAAAACAGCTCAATCATTTAGAGATCGGACGCTGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCACGGGACCAACTGGACCAAGTGCTGTTTCAAAATCAGAAGAGCAGCGCTCTTCTGTGGCTCTACAGTCTGAATTTAATAAGAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACATCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACATTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTTCTGACAATGCGAACAGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTTCGCCAGCGCCCATTAGCATCTAGGTCGGCTGCTGGTGCCCCAAGTGCACCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCCAAAACATCTCCTGGGAAGCAGGTGGATGGGGAGGGTCAACCATTATTGCAGCAGCAACAGCAACAGCAACAGATGGTTCCCTTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGCTGGACAATAGGCGTGCATGGACGCAACAGCCTGTTGGAACAGAACATGTCACTGTGAGTGCTGGCAAATGCCTGACTTATCGGTTGAATAATTTGGGCAATTTGTCAAATAGCTGGATCGATGAGAACATGGACGATACTCTCGCAAATGTGGAGGGAGCGCAGGGAGCTTTGCTCAAGTATCTAAGCAGTATATCATCAAACAGACGGAAGATCTGGATTCTAGTCAAGTATAATGTTGATAATGTGTCAGTTCGTGTTTATGCCTTCAACTTCTCTTCTAATTTTGGGAACGCATCGCTGAAGAACTCAAACGCATCAAATTACTACAGTTTGAAGAGCACTCTTTCTTTATCGGTCTCCAGAAGGATGGAATGCCTTAAATGA 1245 43.37 MAVKTAQSFRDRTLEFQNITERLKKSFSSGTGPTGPSAVSKSEEQRSSVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGAPSAPPPPWAKASTSFSKTSPGKQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRLDNRRAWTQQPVGTEHVTVSAGKCLTYRLNNLGNLSNSWIDENMDDTLANVEGAQGALLKYLSSISSNRRKIWILVKYNVDNVSVRVYAFNFSSNFGNASLKNSNASNYYSLKSTLSLSVSRRMECLK 414
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 25485306 25490170 + CrPI670011_08g012260.1 Cre08g1226 506144
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1226 414 MobiDBLite consensus disorder prediction 170 190 - -
Cre08g1226 414 SUPERFAMILY t-snare proteins 52 289 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre08g1226 414 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 289 IPR000727 -
Cre08g1226 414 SMART tSNARE_6 241 306 IPR000727 -
Cre08g1226 414 MobiDBLite consensus disorder prediction 24 46 - -
Cre08g1226 414 CDD SNARE_syntaxin5 249 363 - -
Cre08g1226 414 MobiDBLite consensus disorder prediction 209 242 - -
Cre08g1226 414 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Cre08g1226 414 MobiDBLite consensus disorder prediction 168 242 - -
Cre08g1226 414 Gene3D - 50 296 - -
Cre08g1226 414 Pfam SNARE domain 326 362 IPR000727 -
Cre08g1226 414 PANTHER SYNTAXIN 54 361 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0761 Cre-Chr7:5780108 Cre08g1226 Cre-Chr8:25485306 1.40E-66 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1226 K08490 - csv:101203633 511.916