Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1229 ATGGACGTTCCCTCAGTGGAACTAAATTGTGAAAGTGAAGGAGACTCTTACCCTTTATTAATGGCACGACCTGAAAATTCTAACAGCAGTGAGCATATCATTGACATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGGTAGGAGTTCAAATGGGTTAAATTCATCGCAGCCTGAAGATAGACCTTCAAGTAGTACCCGAGTTCCCTTGTCTCAACCTTCAATTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCTCGTGCCCCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTCTATTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATCCTCTTCAATCCAGCCAGAATTCTTCTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCCGCATCCTGCCCCATCTGCTAGAGGCAGTCAAGGGTCAGGAGTACTATCAGCAAGATTAAAAGTATTGGTGGAATATTTTAAGATGGGCCTGGATTGCTTCTTTGCTGTTTGGTTTGTGGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACATCAGAATCTATTAATGCATTACCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGGGATGATAGAGAAAACAACTCCGGGGCTGGTGATGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAACGAGTGATTTCTGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCGAAATACGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCACACTTTTTCCACAAGGACTGTGTAGATAAATGGTTGAAGATCAATGCCTTGTGCCCGCTTTGCAAAACCGAGGTTGGCGAGAGTATCATCAACTCTCTTGAGGGGACAAACAGACAACAACAGGGTGATTAG 1278 43.74 MDVPSVELNCESEGDSYPLLMARPENSNSSEHIIDITGTGDSAPSSLPHGRSSNGLNSSQPEDRPSSSTRVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDPLQSSQNSSRINVPAGPFSLSVSRASEGEELPHPAPSARGSQGSGVLSARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATSESINALPTYKFKLKKSRSGDDRENNSGAGDGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESIINSLEGTNRQQQGD 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25500876 25503958 - CrPI670011_08g012290.1 Cre08g1229 506147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1229 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 408 - -
Cre08g1229 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Cre08g1229 425 SMART ringv_2 362 404 IPR011016 GO:0008270(InterPro)
Cre08g1229 425 FunFam E3 ubiquitin-protein ligase 346 412 - -
Cre08g1229 425 MobiDBLite consensus disorder prediction 1 96 - -
Cre08g1229 425 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Cre08g1229 425 Pfam Ring finger domain 363 404 IPR001841 -
Cre08g1229 425 SUPERFAMILY RING/U-box 355 410 - -
Cre08g1229 425 SMART ring_2 363 403 IPR001841 -
Cre08g1229 425 MobiDBLite consensus disorder prediction 22 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0328 Cre-Chr1:2710089 Cre08g1229 Cre-Chr8:25500876 1.30E-46 dispersed
Cre08g1229 Cre-Chr8:25500876 Cre09g1874 Cre-Chr9:37331551 3.60E-33 dispersed
Cre08g1229 Cre-Chr8:25500876 Cre01g0677 Cre-Chr1:6230429 6.20E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1229 - - - 0.0