Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1231 ATGATATTTATATGTCTGTTCGGTAGGCGACTCGTTCAAAAAAACTCCATCTCCTTCCCGCTCCTTCTCCCCGCTCCTCCGCCCTGTTCCTCACCCGCTAGCTCCGTCGCCTATGCCCGCCGTCTCATTCCATTTTTATGCACTCAAAGCTATGGCCGACTGGCTGATCGGAGAAGATGTTGGAATGGAGCTTCCAGTGAATGCTCTTTGACTGTTTTTTTCTGCGTTGGTTGCTCCTTGCTGCAATATTGTTCTATTGCTGAAAGAAAGAAATTCAGGCTCTGGAGATGCAGTTTTCATTTCAAATTGCTAGCAAAATTCTCTTTACGAGTTCAAATGCCAAGTTCTAGCCGTGCATTTGCTTGTCCACTCACAACAGCTCTGTTGAATATGATGAAAGAAAAGGTTGCTGTCAGAATCACGCGCTCCCAGTCTAATTCCTCAAGCAGACTAGGAGCTAATTCACCCTCATTGCAACTTTCACTCAAAGAATTGCGCAAACGTGGTCATACAGAAAACTCTGAACGAGCACAACTGGATGGAAGTAATGCTTCCACAACTATTATTGTTGGTGTTCGGCGCAAAAGAAGATCAGTGCTCAAGGATGTTACCAACATGTCCTGTGAGAGTAGTAATCTGGGGTGCTTGCATGCTTCTAAAGTTCAGGTGCAAGAGGTTTCACAGATCGAATCACTTGAAGATTCACCCGTTAAAAGGATGGCAGAATCACTAGGTACCTCTCCAGTGATGAGGTCAGACAAACAAGAGACAACACAGGCGAACAAGTTTCAGAGTGTCATAGGATGCAAAAATTGTGCGTTCCTCATGCCTTCAGGATCAAACGACCACCAAATGAAAGTTGAGGCTACGGTTTGTGAGAAATTAAACCATCTCGGTACTTTGGATGCTATTTCAAACTCAGAAGATCCTCAAGCTTGCACCCTATATGCCCATAATATATATGATACTAATCGTGTTATAGAGCTCGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATTGATTGGCTAGTGGAGGTTTCTGAAGAATATAAACTGATCTCTGACACACTTTACCTCACCGTGAATCTCATTGATCGGTTTCTCTCTCAAAGTTACATTGAAAGGCATAGATTACAACTTCTTGGTGTCACTTGCATGTTAATTGCCTCTAAATATGAAGAAGTCTGTGCACCATTTGTGGAAGAGTTTTGCTGCATCACAGACAACACCTATGCGAGAGAAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACGTGCTTAATTTTCAGCTCTCTGTTCCCACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACAGGCTTCTTGCAAGGAAACTTGTGTCGAGTTCGAGCATTTAACAAATTATCTAGCAGAGTTGACTCTTGGAGAGTACAGCTTCCTCAGATTTCTGCCTTCAGCAGTAGCTGCATCAGTGGTGTTCTTAGCCAGATGGATTCTGCATCAACCAAATCAACCATGGAACCTGGCTTTAGAGCATTATACCAATTACAATGTCTCCAAGTTAAGAACTTCAGTACTTGCCTTGGAAGATCTAAGATTGAACTCCACAGGTTGCCCTTTAAACGCCGTATTCCAGAAGTATAGACAACAGAAGTTTGGAAGTGTGGCAACTTTAACCTCCACAAAATCAGTTCTCTCAGCTTTCCCCAACCAGACAGATACCTGA 1755 42.79 MIFICLFGRRLVQKNSISFPLLLPAPPPCSSPASSVAYARRLIPFLCTQSYGRLADRRRCWNGASSECSLTVFFCVGCSLLQYCSIAERKKFRLWRCSFHFKLLAKFSLRVQMPSSSRAFACPLTTALLNMMKEKVAVRITRSQSNSSSRLGANSPSLQLSLKELRKRGHTENSERAQLDGSNASTTIIVGVRRKRRSVLKDVTNMSCESSNLGCLHASKVQVQEVSQIESLEDSPVKRMAESLGTSPVMRSDKQETTQANKFQSVIGCKNCAFLMPSGSNDHQMKVEATVCEKLNHLGTLDAISNSEDPQACTLYAHNIYDTNRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSEEYKLISDTLYLTVNLIDRFLSQSYIERHRLQLLGVTCMLIASKYEEVCAPFVEEFCCITDNTYAREEVLKMEGEVLNVLNFQLSVPTTKTFLRRFVQVAQASCKETCVEFEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLARWILHQPNQPWNLALEHYTNYNVSKLRTSVLALEDLRLNSTGCPLNAVFQKYRQQKFGSVATLTSTKSVLSAFPNQTDT 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25516459 25523638 - CrPI670011_08g012310.1 Cre08g1231 506149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1231 584 ProSitePatterns Cyclins signature. 350 381 IPR048258 -
Cre08g1231 584 Gene3D - 333 446 - -
Cre08g1231 584 PANTHER CYCLINS 302 558 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre08g1231 584 Gene3D - 320 567 - -
Cre08g1231 584 SMART Cyclin_C_2 448 571 IPR004367 -
Cre08g1231 584 FunFam Mitotic cyclin 6 333 433 - -
Cre08g1231 584 SMART cyclin_7 355 439 IPR013763 -
Cre08g1231 584 SMART cyclin_7 452 540 IPR013763 -
Cre08g1231 584 SUPERFAMILY Cyclin-like 308 445 IPR036915 -
Cre08g1231 584 FunFam Cyclin A1 435 567 - -
Cre08g1231 584 SUPERFAMILY Cyclin-like 447 572 IPR036915 -
Cre08g1231 584 Pfam Cyclin, C-terminal domain 448 569 IPR004367 -
Cre08g1231 584 Pfam Cyclin, N-terminal domain 320 446 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1231 Cre-Chr8:25516459 Cre08g1567 Cre-Chr8:28289464 4.00E-67 dispersed
Cre05g1879 Cre-Chr5:30930794 Cre08g1231 Cre-Chr8:25516459 5.80E-112 wgd
Cre08g1231 Cre-Chr8:25516459 Cre09g0228 Cre-Chr9:2391492 3.50E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1231 K06627 - csv:101211578 778.089