Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1238 ATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCAGAGGGAAAAGTGTCTTCAGATCCTGTGGCTATTGATGCGCCTGGAGGCTTTCTTTTCGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGAGAAGCACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCAAGAGAGCAACAGCAACATCAGCAACATCAACAGCAGCAGCAGCAGCAAACACAGCCACAACAACAACAACCACAACACATGCAGATGCTTCTAATGCAGAGACATGCCCAACAGCAGCAGCAGCAGCAGCAGCAACAACAGCATCAACAGCAACAACAGCCACAGCAGCAGCAACAACAGACTCAGCAACAACAACAACAGCGAAGAGATGGAGCCCAACTCTTAAATGGAAATTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGTCAGAATCCCGGATCTGTAAATGCGTTGGCTACAAAAATGTACGAGGACAGATTAAAACTACCTCTTCAGAGGGATTCTCTAGATGATGCGGCTATGAAACAAAGGTATGGAGAAAACGTTGGGCAGCTGTTGGACCCAAATCATGCATCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACATGGTGCAGCTGGGGGAATGTCTCCTCAAGTTCAATCTAGGAGCCAGCAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGTCCTGAGGGATCACTGATGGGCATTCCTGGATCAAATCATGGCGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACCGGGCTAGAGCAACTACGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTTCTCAATCATTTCCTCAGCTTCATCAGATGTTGACACCACAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACATCACCTTCTGTTACTGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGGCAAAAGATGGACTTCCAAATTCTGTTGGTGATGTTGTACCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCTTGCCTCGTGGAGATAGCACAGAAATGATCATTAAGATAAAAATGGCTCAAATGCATCAACAACAGCAGCAACAGAATAGTAGCCAGCAACAGCAGCAGCATGCTCTTTCTAATCAACAGTCGCAAAGCTCAAACCACAATATGCCTCAGCAAGAAAAAATTGGAGGTGCTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCTTTTCGTGGAAATGATCAGGTTTCAAAAAATCAGGCTGGGAGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCAGCAAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACCCATACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGCAGTGATGGCACTGGCACTTTTACATCCCCCTCAAATCAGTTGGCTGATATGGATCGCTTTGTGGAGGATGGGTCTCTTGATGACAACGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATCCTGTAGGGCGCTGCATGGATGGCAGCAAAGGATTCACATTTACGGAGGTGAATTCTGTTAGAGCAAGCTCAAGCAAAGTTTTCTCTTGCCACTTTTCATCTGATGGAAAACTGCTTGCTAGTGGTGGCCAGGATAAGAAGGCTGTATTATGGTACACAGAAAATTTAAAGCCGAAAACTTCACTTGAAGAACATACTTCCATGATCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGGCTTGCAACTTCATCATTCGATCGAACAGTCAGAGTTTGGGATGCTGACAATCATTGTTATTCTCTACGTACTTTTACGGGACATTCTGCTTCTGTTACGTCTTTGGACTTCCATCCGAAGAAGGACGACTTTATTTGCTCTTGTGATAGTGATGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTATGGGCCAGATGAGATTTCAACCTCGTCTCGGGAGATACTTTGCTGCTTCTGTAGATAATATCGTATCCATTTTTGATGTTGAGACACAAGCACGTCTGCATTCATTACAGGGACACACCCAAAAGGTTCAGTCACTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTTAGCGAGGATTCTGTTCGAGTGTGGACGCTTGCTTCGGGGAATGAGGGCGAATCCATTCACGAGTTGAGCTGTAACGGCAATAAATTCCACTCTTGTGTTTTCCATCCCACCTATTCTACTTTGCTGGTCATTGGATGCTACCAGTCATTAGAGCTTTGGAACACGACTGAGAACAAGACGATGACTCTATCAGCTCATGAAGCTTTAATATCTTCCTTAGCAGTGTCCACGGCATCGGGTCTAGTTGCTTCGGCCAGCCACGACAAGTTCGTCAAACTGTGGAAGTAA 2667 45.03 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGNSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAAMKQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHGAAGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKPFIQASQSFPQLHQMLTPQHQQQLMLAQQNLTSPSVTDDGRRLRMLLNSRMAKDGLPNSVGDVVPNVGSPLQAGSPLLPRGDSTEMIIKIKMAQMHQQQQQQNSSQQQQQHALSNQQSQSSNHNMPQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQAGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRCMDGSKGFTFTEVNSVRASSSKVFSCHFSSDGKLLASGGQDKKAVLWYTENLKPKTSLEEHTSMITDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVTSLDFHPKKDDFICSCDSDGEIRYWNITNGSCAAVFKGGMGQMRFQPRLGRYFAASVDNIVSIFDVETQARLHSLQGHTQKVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEALISSLAVSTASGLVASASHDKFVKLWK 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25581254 25589272 - CrPI670011_08g012380.1 Cre08g1238 506156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1238 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 771 811 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 Gene3D - 586 737 IPR015943 GO:0005515(InterPro)
Cre08g1238 888 MobiDBLite consensus disorder prediction 250 270 - -
Cre08g1238 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 856 888 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 PANTHER TRANSCRIPTION ACTIVATOR MSS11 3 888 - GO:0005634(PANTHER)
Cre08g1238 888 MobiDBLite consensus disorder prediction 414 540 - -
Cre08g1238 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 645 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 856 888 - -
Cre08g1238 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 646 681 - -
Cre08g1238 888 Pfam LisH 10 36 IPR006594 GO:0005515(InterPro)
Cre08g1238 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 727 - -
Cre08g1238 888 MobiDBLite consensus disorder prediction 238 293 - -
Cre08g1238 888 Pfam WD domain, G-beta repeat 685 722 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 Pfam WD domain, G-beta repeat 853 887 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 Pfam WD domain, G-beta repeat 767 801 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 Pfam WD domain, G-beta repeat 641 678 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 Pfam WD domain, G-beta repeat 601 635 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 SMART Lish 8 40 IPR006594 GO:0005515(InterPro)
Cre08g1238 888 Gene3D - 738 888 IPR015943 GO:0005515(InterPro)
Cre08g1238 888 ProSitePatterns Trp-Asp (WD) repeats signature. 665 679 IPR019775 -
Cre08g1238 888 SMART WD40_4 725 761 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 SMART WD40_4 808 847 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 SMART WD40_4 849 888 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 SMART WD40_4 639 678 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 SMART WD40_4 682 722 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 SMART WD40_4 764 802 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 SMART WD40_4 597 636 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 MobiDBLite consensus disorder prediction 459 519 - -
Cre08g1238 888 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515(InterPro)
Cre08g1238 888 CDD WD40 600 888 - -
Cre08g1238 888 MobiDBLite consensus disorder prediction 414 452 - -
Cre08g1238 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 646 681 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 SUPERFAMILY WD40 repeat-like 598 888 IPR036322 GO:0005515(InterPro)
Cre08g1238 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 731 IPR001680 GO:0005515(InterPro)
Cre08g1238 888 MobiDBLite consensus disorder prediction 89 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1238 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0429 Cre-Chr5:3883667 Cre08g1238 Cre-Chr8:25581254 6.60E-166 dispersed
Cre06g1902 Cre-Chr6:25757940 Cre08g1238 Cre-Chr8:25581254 4.70E-146 dispersed
Cre07g1641 Cre-Chr7:31842672 Cre08g1238 Cre-Chr8:25581254 5.90E-09 dispersed
Cre08g1238 Cre-Chr8:25581254 Cre11g0895 Cre-Chr11:6117250 2.70E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g425 . . . . . . . . . . . . . . . Cpe07g00268 . Bhi04g01023 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01277 . . . Bma02g00036 . . . . . . . . . . . . . . . . Cla08g01295 Cam08g1754 Cec08g1334 Cco08g1458 Clacu08g1451 . Cre08g1238 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54207 PF00400 WD40 0.0081 CL0186 Cre TR