Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1250 ATGAGCAACATTATTGTCCCTTTACCTTCCAACCTTCTCCCAGACGCAGCAAATCCAGAATGGATGAGCAAAGGCGACAACGCATGGCAGTTAACGGCGGCGACACTAGTGGGACTACAGAGCGTGCCGGGTCTAATAATCCTGTACGGCGGAGCAGTTAAGAAGAAATGGGCCATAAACTCAGCGTTCATGGCTCTGTACGCGTTCGCTTGCGTGTTGGTTTGTTGGGTGGGGTGGGGCTACCGGCTGTCGTTTGGGGATAAATTGGCGCCGTTTTGGGGGAAATTGAATGTGGCTTTGGACCAGGAGTTTCTGCTGGCGCCAGCCTTTGCTGGGAAGTTTCCTTCGGCCACAATGGTTTTCTTTCAATTTGTATTTGCGGCCATTACTTTGGTTTTGATCGCTGGGGCTTTACTTGGACGTATGAACTTTTATGCTTGGATGTTGTTTGTGCCGCTTTGGTTAACGTTTTCGTATACGTTTGTGGCCTTTAGTATTTGGAGTCCTAATGGCTTTTTCTTTAAAATGGGACTTATTGATTACTCTGGTGGTTACGTCATTCATTTGTCTTCTGGTGTTGCTGGCTTCACCGCTGCTTATTGGGTTGGGCCACGGCTGTCGAAGGACAGAGAAAGCTTCCCTCCGAACAACATTCTTCTGATGCTGGCCGGAGCAGGGTTGCTGTGGATGGGTTGGACCGGGTTCAACGGCGGAGACCCATACGCCGCCAACATCGACGCCTCACTGGCGGCTCTTAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGATATCGTCTTCTTCAGAAAGCCCTCCGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCGGCGATTATAATGGGAGTGCTATCAGGTTCAATCCCATGGTTCACAATGATGGTAGTTCACAAGAAATCCGCCATTCTCCAAAAGGTAGACGACACAATGGCCGTCCTCCACACCCACGCCATCGCCGGCAGCCTCGGCGGCATTTTAAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTTCTACGGCGCCTACAACAAATACATTGGCCTTTTCTACGGCTTCAACACAAAACAAGTTAAACTCGGCTTTCGCCAACTCGGCGTTCAACTCCTCGGAATCATCTTCGTCACTCTCATAAACGTCATTGTCACTAGCCTTATCTGTGTCCTCCTCCAATATATCGTCCCGCTCCGAATGTCCGAGGAGGACATGGCTATCGGCGACGAGGCCGCCCATGGCGAAGAGGCCTACGCCATTTGGGGCCAGGGCGAGAAGATGGATTCTTCTAAATACGATATTGAGATTCCTGTGTCAACCAAACATAGGCATTCAGGCCAGATTGAAATGGCCTAA 1428 51.82 MSNIIVPLPSNLLPDAANPEWMSKGDNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLAPFWGKLNVALDQEFLLAPAFAGKFPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAALNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGVLSGSIPWFTMMVVHKKSAILQKVDDTMAVLHTHAIAGSLGGILSGIFAEPRLNFVFYGAYNKYIGLFYGFNTKQVKLGFRQLGVQLLGIIFVTLINVIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEIPVSTKHRHSGQIEMA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25690124 25693872 + CrPI670011_08g012500.1 Cre08g1250 506168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1250 475 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre08g1250 475 PANTHER AMMONIUM TRANSPORTER MEP2 17 454 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Cre08g1250 475 FunFam Ammonium transporter 11 445 - -
Cre08g1250 475 Pfam Ammonium Transporter Family 28 442 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre08g1250 475 Gene3D Ammonium transporter AmtB like domains 13 446 IPR029020 -
Cre08g1250 475 NCBIfam ammonium transporter 26 442 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre08g1250 475 SUPERFAMILY Ammonium transporter 21 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1684 Cre-Chr4:35137478 Cre08g1250 Cre-Chr8:25690124 1.20E-162 dispersed
Cre08g1250 Cre-Chr8:25690124 Cre10g2339 Cre-Chr10:37568775 1.60E-151 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1250 K03320 - csv:101210590 904.434