Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1257 ATGTTAACCACCGTCTCCGGAGCCACTCCAACTTTTCCCACTTCTCCGTCGCAATCCTCTTCAGATTCTTTTTCAGACTTTGTTAATAATTTATTTCCAATAGAGCCCGGCGGGAGTGATTTTGCAACCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTCTTATCTCCTCCAAATGTTGACTCAAATCTTCTGAAAAGGACTCACAATGCCCAGCCATCTAATACTGAATTAGTTGCCGAATTACAGGAATGTAACAGTAAGGATCCATGTAGTATCTATCAGGATTGCTTGGATTTTAGGCCTCAATCTTTTCATGAATGCAATAACAAAGAAACATTTGGGGGAGCTTTTCAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAGTGTGAAGGCAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACATCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGACTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAAAAACCTGCTCAGAAAATGCCTCGTTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAACCGAGCAATTTAGAAGTCCATATGAGACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAAAGGAAGAAAAGCTCAGTCAACAACAGTAGCGATGATTCAAAACGTTGCTGCAAATGTACAAAAACAAAATGCCTGAAACTGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTAGTGAGTCTTGTTCTTGTCAATTGTGCTTTAACAAACCTGAGAGTGTACATATTGTTCTTGAGAGGAGGCATCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCGAGGGTTATTGAGGACCGTAACGAGCTTCCAGTAAATAATGAGAATGGAAGCCTATCGACGCCATCCTTGGCTAGACATAAAAAAGGGTGCAAGTGCAAGAAATCCATGTGCTCTAAACAATACTGCGAATGCTTTCAGGCTAATGTTGGATGCTCGGATAGATGTCGATGTGACAACTGTAAAAATGTCCATGGGAAGAGAGAAGAGGTGGCAACTGGTCGAGCTGATGTCGGAAGAAGACTCGTTGGCAGGTTGATTGATGACCATAATGCGACAGCATTAAGTCATGAAAAGGATTCCCCAAAATCCCGGTTGATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATGTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGACAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGGTAACGAAAATGAGGGTGGGATGAATAATTCTTTGGGAAGGTTGAAGAGCCATATGAATAATTCTTTGGGAAGGTTGAAGAGCCATAGATATATATTGAAGTCCATGCCTCCCCCACCCCTCACCCCACGCAACAAATGA 1917 42.15 MLTTVSGATPTFPTSPSQSSSDSFSDFVNNLFPIEPGGSDFATPGFTGLESSPFVLSPPNVDSNLLKRTHNAQPSNTELVAELQECNSKDPCSIYQDCLDFRPQSFHECNNKETFGGAFQPLPVPQPLHGMSQRYLQFKEASANAPLNSFPSNFTSSVKATSYDPEFSVLNLDAASNNRVSANSSRSCTLLHPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIADLGMQGVSYHILRNEKTCSENASLTSSITLKSCHAVKTEQFRSPYETRNFESNQPSNLEKINNFHPKRKRKKSSVNNSSDDSKRCCKCTKTKCLKLYCDCFAAGMYCSESCSCQLCFNKPESVHIVLERRHQIESRDPFAFAPRVIEDRNELPVNNENGSLSTPSLARHKKGCKCKKSMCSKQYCECFQANVGCSDRCRCDNCKNVHGKREEVATGRADVGRRLVGRLIDDHNATALSHEKDSPKSRLMSGRCLPSPDFDSTSSSSPDYSDMFVETKTDILDVNSFKWQQMNCDNGGTSSTSFIPSKLRGCTNISRIGELRIGSSSILCRRSPDTPLIQTGNMTSINCINGSSPDKKVALPPLYGNENEGGMNNSLGRLKSHMNNSLGRLKSHRYILKSMPPPPLTPRNK 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25774642 25779931 - CrPI670011_08g012570.1 Cre08g1257 506175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1257 638 MobiDBLite consensus disorder prediction 1 21 - -
Cre08g1257 638 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 312 347 IPR005172 -
Cre08g1257 638 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 398 434 IPR005172 -
Cre08g1257 638 SMART CXC_2 396 437 IPR033467 -
Cre08g1257 638 SMART CXC_2 309 350 IPR033467 -
Cre08g1257 638 MobiDBLite consensus disorder prediction 275 312 - -
Cre08g1257 638 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 127 635 IPR044522 GO:0003700(InterPro)
Cre08g1257 638 MobiDBLite consensus disorder prediction 275 289 - -
Cre08g1257 638 ProSiteProfiles CRC domain profile. 310 436 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1386 Cre-Chr6:8035837 Cre08g1257 Cre-Chr8:25774642 1.10E-41 dispersed
Cre06g1688 Cre-Chr6:13797090 Cre08g1257 Cre-Chr8:25774642 1.80E-26 dispersed
Cre08g1257 Cre-Chr8:25774642 Cre11g0724 Cre-Chr11:4368939 1.30E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54209 PF03638 TCR 1.40E-10 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1257 K21776 - cit:102611790 261.536