Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1275 ATGGGAGAAACAAGGGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCTCCCGAGTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGGAAGAAGGGCTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGATTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTTGTTCTGTGCCATACTAGGGAGCTTGCGTACCAGATCTGTCACGAGTTTGAAAGGTTCAGCACATATCTTCCGGATCTGAAGGTTGCTGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAGTGTGACAAGATGCTCGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGACGACGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGAAAGTTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCCATATGCATCCACTCTGGCATGTCTCAGGAAGAAAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACATAAGCGGATTCTTGTGGCTACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTTAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCGATTACGTTCGTATCATCTGCGGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACTTACATTGTCTCTTGTCAGTCAGTTGCAGTTGATTTTGAATGTGCCATCATAGGTGTAGAGATCTTCAGCATAGAATATCGGCTACCCAGAGCCGGAAGGGGCGACAAAGCCTCAATCGACGGACACGAATGCGTCAAATGGCTTGACGGGCAGAACCATTTGTCAGTAGTTTACGTCTCATTGTGA 1455 43.85 MGETRDNEYEEELLDYEEEEEKAPESVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYIVSCQSVAVDFECAIIGVEIFSIEYRLPRAGRGDKASIDGHECVKWLDGQNHLSVVYVSL 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25889458 25895533 - CrPI670011_08g012750.1 Cre08g1275 506193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1275 484 SMART helicmild6 302 383 IPR001650 -
Cre08g1275 484 CDD DEADc_DDX39 45 252 - -
Cre08g1275 484 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Cre08g1275 484 SMART ultradead3 65 266 IPR014001 -
Cre08g1275 484 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Cre08g1275 484 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Cre08g1275 484 CDD SF2_C_DEAD 263 392 - -
Cre08g1275 484 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cre08g1275 484 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 410 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cre08g1275 484 Gene3D - 42 258 IPR027417 -
Cre08g1275 484 MobiDBLite consensus disorder prediction 1 22 - -
Cre08g1275 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Cre08g1275 484 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724(InterPro)
Cre08g1275 484 Gene3D - 259 427 IPR027417 -
Cre08g1275 484 MobiDBLite consensus disorder prediction 1 28 - -
Cre08g1275 484 Pfam Helicase conserved C-terminal domain 275 383 IPR001650 -
Cre08g1275 484 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1275 Cre-Chr8:25889458 Cre09g0071 Cre-Chr9:957910 2.50E-62 dispersed
Cre08g1275 Cre-Chr8:25889458 Cre07g1748 Cre-Chr7:32945787 5.00E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1275 K12812 - csv:101217346 820.461