Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1276 ATGGGATCGGAAGAAAGTGAAAAGATAGTGGTAACTCAGGTAAGCTTTGGTGGATTTGACAGTGATGTTAAAGCAAGAGATCTTATGAGATATCTCGAATCCGAGATTGGGCTTGTGGACAGATGTAGATTGAAAACTTCTTGGACTCCTCCAGAATCGTACCCAGATTTTGACGTCAGTAATGTTGCTGATGTTATAAAATCTGATGATTACAAGAAGGTGGTGCCTCATGCATTTGTGCATTTTGCCTCACCTGACTCTGCAGCTGCAGCTCTACATGCTGCAGGTTGTAGTGAGCTATTTTTGAACGATAAATTGTTGAAGGCGAGTTTGGGGCCAGAGAGTCCTTACCATGTAAATCAGAGGCGGAGGACTAAGGTTCCCTTTAAGTTATCTGATGTGCAAGTTGATATAGGGAATGTAACTTGTCAAGACGGGTTTTCAGTTGCTTGGAGAGGGCCTTCAAGTGGAATGGATTTTCTAGTGGATCCCTTTGATGGAACCTGTAAATTTTGTTTCACGAAGGATACTGCATTCTCTTTTAAAGATGACAACAAGCATACAGTGTTGAAGTGTGATTACAAAGTGCAGTTCTTGGTGAGGGACATTGATCAGATCAAAAGATATACTGATATGTCATGTTATGTTATTCTCTTGCAACTGACTTCGTCACCCTGCATTTGGTATAGAACTGCAGATGATGATATTGCCAAATCAGTTCCATATGATTTGTTGGATGATGATGATCCATGGATCCGGACAACAGATTTCACGATTAGTGGAGCTATTGGTCGTTGTCATACTTACAGAGTTTCAGTCCCACCCCGCTATGGTATCAAGCTGAACAATGCCATGAATTATTTAAAAGAACAGAGAGTGCACCAGGCCTCCCTCAACCGGCCTCCCAAGATCCTGAATGAACCAGATTATGGAGTTCAAATGACTGATCACTTCTTTTGCATCCATTATAAAGAAGACATATCCTTTGAGATATTATTTCTAATAAATGCCGTAATGCACAGAGGGATAATCAACCAGCACCAAATGTCTGATAGATTCTTTGATTTGCTAAGAAACCAGCCAAATGAAGTTAATTTGGCTGCTTTAAGTCATATTCATGCTTATAGACATCCTGTACTGGATGCTTGTAAGAGGCTAAAACTTGTACAAGAATGGTTGTTGAAGAACCCTAGGATTTGGAAAAGATCTAAAGAGCTGGTTGATATCATTGAAATAAGGAGATTAGTAATAACTCCATCAAAAGCATATTGCTTTCCACCTGAAGTTGAACTCTCCAATAGGGTTTTGAGAAGATTTAAGGATGTTGCTGATAGGTTCCTCAGGGTTACCTTCATGGATGAAGGCATGAAGAAAATCAATTCGCATGTTTATACCTATTATGTTGCTCCTATAGTAAAGGAAATTACTTCAAGCTCCTTTCCCCAAAAAACTAAAATATTTGGAAGGATGAAACACATTCTGAAACATGGGTTTCATTTGTGTGGTAGGAAATACTCCTTTTTGGCATATTCGTCCAACCAACTGAGGGACCAATCAGCTTGGTTTTTTTCTGAATTAAAAGATGTGACGGTTGATAGTATTATACGTTGGATGGGGAGATTTAAAAATAAAAATGTTGCGAAGTGTGCTGCTAGAATTGGTCAGTGCTTTTCATCTACTTATGCAACAATTGAAGTTCCAAGAAACATGGTCAATCACGATCTTCCTGATATCAAGAGGAATGGATATGTTTTCTCTGATGGGATTGGTACCATCACTCCTGATCTTGCGCAGGAAGTTGCAGACAAATTAAAAATGGATGGGAGCCCACCATGTGCTTACCAAATTAGATATGCAGGATGCAAAGGTGTTGTTGCCACTTGGCCATCCAAGGGTGACGGGATCAGACTTGCTTTAAGGCCAAGCATGAATAAATTTCAATCGGAACATAGAATCTTGGAGATCTGTTCATGGACTAGATTCCAGCCAGGTTTTCTTAATAGGCAGATTATAACCCTACTTTCTACACTAAGTGTTCCTGATGAAACTTTCTGGAGTATGCAGGAGACTATGGTTTCAAAACTGGATAGAATGATCACCGATACAGAGGTGGCATTTGATGTTCTCACTGCATCCTGTGCTGAGCAAGGAAATGCAGCGGCAATTATGTTGAGTGCTGGTTTTGAACCTCGAACAGAACCTCATTTAAGGGGCATGCTACTGTGTATAAGAGCAGCGCAGCTCTGGGGCCTTCGGGAAAAAGCTAGGATCTTTGTTACTGAGGGGAGGTGGTGTATGGGGTGTTTCGATGAGAGTGGCGTGTTACAAGAAGGCCAATGCTTCATCCAAGTATCCACTCCATTGCTTGAGAAGTGTTTCTCCAAGCATGGGTCTCTCTTTGCTGAGACAAAGAATAATCTTACTGTGGTAAGAGGGACTGTAGTCATAGCCAAAAATCCGTGCCTTCATCCCGGAGATGTGAGAATTCTTGAAGCAGTTGATGCTCCCGAGTTGCATCATATGTACGATTGCCTTGTGTTTCCTCAAAATGGTGAACGACCCCATACAAATGAAGCTTCTGGAAGTGATTTGGATGGGGATCTCTACTTTATTACTTGGGATAAAAATCTTATTCCACCTAGTAAAAAAAGTTGGCCACCTATGGAGTATGCTCCAGCAGAAGTAAAGACTCTTACACGTGATGTTACTAAATGGGATATAATGGAGTTCTTTGCAAAAAATATGATCAATGAGAGTCTGGGGACAATATGCAATGCGCATGTTGTTCATGCTGACCGCAGCGAGTATGGAGCTTTGGATGAGAACTGCATTCAATTATCTGAATTAGCTGCCACAGCAGTTGATTTCCCCAAGACAGGGAAGATTGTGACCATGCCTCCCCATCTGAAACCAAAACTATATCCAGATTTTATGGGAAAAGAAGCTACTCAATCATACAAGTCCACCAAAATTCTGGGAAGAATGTACCGCCGAATTAGAGACGCGTATGATGATGATATGATCACATCATGTGAGCTAAATTTTACTCTTCACGATGTCCGTTATGATGTAGATCTCGAAGTTGCAGGAGCAGAAGATTTCATCACAGAAGCATGGAATCAAAAGTGCTCGTATGACGCTCAGCTGAGCGGTTTACTAGGACAATATAAAGTTAATAGGGAAGAAGAGATTGTCACTGGGCATATTTGGTCCATGCCAAAGTACAGTAGCAGGAAGCAAGGAGAGCTGAAGGAGAAGCTTAAGCATTCTTATACCACTCTTAAGAAAGAGTTCAGGCAAGTTTTTGAGAATATTGGCCCAGAGTTTCAGCAACTCACTGATGACGAAAGGAATGCATTGTACGAAAGAAAGGCATCTGCCTGGTATCAGGTGGCATACCATCCAACTTGGTTGAAGAAATCAATGGAGCTGCGAGAACTAGACATTCCTGAGACCGTCCCGATGTTAAGCTTTCCTTGGATTGCTGCCGATTATCTTGCACGGATCAAGATCAAGTGCAGGCGGATGAAAAGTTTCGACCCGACAAAGCCGATTAACTCTTTGGCGAGTTATCTTTCTGATCGAATTAATGGCGGCAAAAGCTATGCAAGGAAGAAGAAAAACTCTAAAATAGATGGAGGAATATCCGAGTTTTCCTGTTTGTTCGACGCATTTTCCGGGAAAAGCTGGGATCCTTTTCTATTTCAACTCGGTTGCAAGAGACAAATGCCGCGCTTACTTCATGGGACGCTTCATGCCGATATATATGGAATCGACAGGCTTCAAACTGGATGTCCTATTTTCTGCGGGAAGGATAAAAGGATTGTTGGATCTCAAATGTATGCAACAGTTGATCTTGATAAGGCCAGAGTTGGCCGGACGAGGATAGTAGATCAGCCATACGCTCCTGAATGGAACGACCATTTTCGTATATATTGTGCTCATACAGTGTCACATATTATATTCACAGTTAAAGATGGAGGTGTAATCGGTGCAACATTGATTGGAAGAGCTTATGTGCCTGTTGAGGATATCATTAAGGGATTTGTATATGAGAAATGGGTTGAAATATTAGATGAAGACGGTAAGCCTTTATATGGTCGTTCTAGAATCCATGTGAAGTTACAATTTTCAAGTGTTAATGAAGACAGGAACTGGTCCCGAGGAATTCCAGATCCTTTCGGTGGTGTACCTTTCACATTCTTCAACCAAAGATGGGGTTGCAAAGTTTCTCTTTACCAGGATGCTCATGTTTTAAACAACTTCCTTCCTCGAGTTGGTTTGTCAGGAGGGAATTTTCATGAAGTACATAGGTGTTGGGAGGACATATTTGATGCAATTAGCAATGCGAGACACTTGATTTACATAACTGGTTGGTCTGTGTATACAGAAATAACTTTGATAAGAGACCGAGAAAGAAGACAGACAGGAGAGGATATTACTCTGGGGCAACTGCTAAAGAAGAAGGCAGACGAAGGTGTGACTGTTTTGCTTCTTGTTTGGGATGACAGAACTTCTACTGAAGAGTTCAAAAGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAATACTTCAAGGGCTCGAAGGTACATTGCGTTCTGTGTCCACGGAATCCTGACGTTGGTAGAAGTATCATTCAGGGGTTTGAGACTGCTACAATGTTTACTCATCACCAAAAAACAGTTGTGCTTGATAGTGAAATAGCTGGTGGAGGAACAGAGAAAAGAAGGATCGTGAGTTTTGTTGGTGGTATTGATCTGTGTGATGGGAGATATGATACACCGAAGCACCCTTTGTTTTCAACTCTAGATTCAATCCACTATACCGATTTTCACCAGCCTAACTTTTCAGGCTCTTCAATTAGGAAAGGCGGTCCTCGGGAACCATGGCATGACATCCATTGCTGCCTAGAAGGACCTGTTGCTTGGGATATTTTGTACAATTTTGAGCAAAGATGGCGAAAGCAAGTCGGAAACAACTTGTTGATTCCAATGCAAAAGCTTGAAGAAACCATTACCCGCCCAGTAATGGTTTTACCAGCAGACGACCCTGACACATGGAATGTTCAAATATTTCGGTCTATTGATGGTGGTGCTGTAGTTGGCTTTCCAGAGATACCTGAGGATGCATCCAAAGTAGGCCTTGTAAGTGGGAAGAATAATGTTATAGATAGGAGTATTCAAGATGCTTATATTAATGCTATTCGCCGAGCAAAAAATTTCATATACATTGAGAATCAATATTTCCTTGGAAGCTCTTATGGTTGGAAATCAACTGGTATAAGGGTAGAAGAAATCAATGCTTTGCATCTTATTCCAAAGGAGATCTCACTGAAGATTGTGAGCAAGATCGAAGCTGGAGAGAGATTTACAGCATATATTGTGATTCCAATGTGGCCAGAAGGTATTCCTGAGAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGGAGAACCTTAGACATGATGTACACAGATATAGCTCAAGCCCTTCGGAAGAAGGGTCTCGATGAAAATCCTAAAGATTACCTGACATTCTTCTGCCTTGGCAATCGAGAGAAGAAGAGAACTGGAGAATATGTACCACCGGAGAAGCCAGAACCCAATTCGGATTATGCTCGGGCTCAAGAGCACCGACGTTTTATGATCTATGTTCATTCAAAAATGATGATAGTTGACGATGAATACATAATTATTGGGTCTGCCAACATCAACCAGAGGTCAATGGATGGAGGAAGAGACTCTGAGATTGCAATGGGGGCTTTTCAACCTCATCACCTGGCATCTGGTGAGCCTGCAAGAGGTCAAATCTACGGCTTCAGAGTGGCTCTATGGTACGAGCATCTCGGTCTGTTTGACAAAGCCTTCCATAACCCAGAGAGTGAAGACTGCATCCAATTCGTAAACAAGCTCGCTCTAGAGAACTGGCAATTTTACTCAGACGATACCTTTGATGGCGATCTTCCTGGCCATCTCCTTTCCTATCCCATTGAAGTAGGTCCCAACGGATCGGTTACGGCGCTGCCAAAGTTTGAATTTTTCCCTGACACCAAGGCTCGTGTTCTTGGGCAACTAGCCGAGTACATTCGTCATTCAATGGTTTTATTTATTTCGACCCTTATAAAATCTGCCCAGTCTTCTACTGTGGACCGTCTGGACATTATTCGAAGGCTTCTCTCTTTCGCGGTGTTTTTCAACGTCTGCTCTTCTTCGGATAATTTAGCTTGGAGACGCGTAAATGCATTATCCAGGGAATATTTGGCTTCCGCTCTAACAGATTATAACACGAATGAGAGAAGAAGCTGTCATGGATGCTGCACTGCATCTGCACTAGGTAATGCAATGGATGGGCCGTCTAAAGGTCTGAGAGTTAAAGACCAAGAAGCAAAGAAACAATGCTTACCAGAAAATTGCCCGAGCTCTAGCACATGTGAAATGGACAACAGTACAGTTTGGTCCCAGAGAAGCATGCCATCAGCCCAGTCACAAGATTCTCACAGCAATATTGGGAGCAGTACAGACTTTGTAAACTCTGGACTACTTCTTTGGAATGAGACCAGGAAGCAATGGGTTGGAAATAAAATGTCCGAGAGCCAAAAGCAAGTTCAAGAACCCAAAATAAGCTGGAATGCTACTTATGACAGCTTATTAACAACAAACAAGCCGTTCCCCGAGCCCATACCTCTTGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGTCTATATGACTGA 6750 42.0 MGSEESEKIVVTQVSFGGFDSDVKARDLMRYLESEIGLVDRCRLKTSWTPPESYPDFDVSNVADVIKSDDYKKVVPHAFVHFASPDSAAAALHAAGCSELFLNDKLLKASLGPESPYHVNQRRRTKVPFKLSDVQVDIGNVTCQDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDDNKHTVLKCDYKVQFLVRDIDQIKRYTDMSCYVILLQLTSSPCIWYRTADDDIAKSVPYDLLDDDDPWIRTTDFTISGAIGRCHTYRVSVPPRYGIKLNNAMNYLKEQRVHQASLNRPPKILNEPDYGVQMTDHFFCIHYKEDISFEILFLINAVMHRGIINQHQMSDRFFDLLRNQPNEVNLAALSHIHAYRHPVLDACKRLKLVQEWLLKNPRIWKRSKELVDIIEIRRLVITPSKAYCFPPEVELSNRVLRRFKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFGRMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFSELKDVTVDSIIRWMGRFKNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLPDIKRNGYVFSDGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGCKGVVATWPSKGDGIRLALRPSMNKFQSEHRILEICSWTRFQPGFLNRQIITLLSTLSVPDETFWSMQETMVSKLDRMITDTEVAFDVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLLCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHMYDCLVFPQNGERPHTNEASGSDLDGDLYFITWDKNLIPPSKKSWPPMEYAPAEVKTLTRDVTKWDIMEFFAKNMINESLGTICNAHVVHADRSEYGALDENCIQLSELAATAVDFPKTGKIVTMPPHLKPKLYPDFMGKEATQSYKSTKILGRMYRRIRDAYDDDMITSCELNFTLHDVRYDVDLEVAGAEDFITEAWNQKCSYDAQLSGLLGQYKVNREEEIVTGHIWSMPKYSSRKQGELKEKLKHSYTTLKKEFRQVFENIGPEFQQLTDDERNALYERKASAWYQVAYHPTWLKKSMELRELDIPETVPMLSFPWIAADYLARIKIKCRRMKSFDPTKPINSLASYLSDRINGGKSYARKKKNSKIDGGISEFSCLFDAFSGKSWDPFLFQLGCKRQMPRLLHGTLHADIYGIDRLQTGCPIFCGKDKRIVGSQMYATVDLDKARVGRTRIVDQPYAPEWNDHFRIYCAHTVSHIIFTVKDGGVIGATLIGRAYVPVEDIIKGFVYEKWVEILDEDGKPLYGRSRIHVKLQFSSVNEDRNWSRGIPDPFGGVPFTFFNQRWGCKVSLYQDAHVLNNFLPRVGLSGGNFHEVHRCWEDIFDAISNARHLIYITGWSVYTEITLIRDRERRQTGEDITLGQLLKKKADEGVTVLLLVWDDRTSTEEFKRDGLMATHDQETAEYFKGSKVHCVLCPRNPDVGRSIIQGFETATMFTHHQKTVVLDSEIAGGGTEKRRIVSFVGGIDLCDGRYDTPKHPLFSTLDSIHYTDFHQPNFSGSSIRKGGPREPWHDIHCCLEGPVAWDILYNFEQRWRKQVGNNLLIPMQKLEETITRPVMVLPADDPDTWNVQIFRSIDGGAVVGFPEIPEDASKVGLVSGKNNVIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSTGIRVEEINALHLIPKEISLKIVSKIEAGERFTAYIVIPMWPEGIPESASVQAILDWQRRTLDMMYTDIAQALRKKGLDENPKDYLTFFCLGNREKKRTGEYVPPEKPEPNSDYARAQEHRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPHHLASGEPARGQIYGFRVALWYEHLGLFDKAFHNPESEDCIQFVNKLALENWQFYSDDTFDGDLPGHLLSYPIEVGPNGSVTALPKFEFFPDTKARVLGQLAEYIRHSMVLFISTLIKSAQSSTVDRLDIIRRLLSFAVFFNVCSSSDNLAWRRVNALSREYLASALTDYNTNERRSCHGCCTASALGNAMDGPSKGLRVKDQEAKKQCLPENCPSSSTCEMDNSTVWSQRSMPSAQSQDSHSNIGSSTDFVNSGLLLWNETRKQWVGNKMSESQKQVQEPKISWNATYDSLLTTNKPFPEPIPLAEMIEFLVDVWEQEGLYD 2249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25900790 25913464 + CrPI670011_08g012760.1 Cre08g1276 506194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1276 2249 SUPERFAMILY Phospholipase D/nuclease 1394 1671 - -
Cre08g1276 2249 SUPERFAMILY Phospholipase D/nuclease 1711 1966 - -
Cre08g1276 2249 Pfam Phospholipase D Active site motif 1885 1910 IPR001736 GO:0003824(InterPro)
Cre08g1276 2249 Pfam C2 domain 1278 1356 IPR000008 -
Cre08g1276 2249 Gene3D C2 domain 1249 1388 IPR035892 -
Cre08g1276 2249 FunFam Phospholipase D 1696 1929 - -
Cre08g1276 2249 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1275 1380 IPR035892 -
Cre08g1276 2249 Gene3D Endonuclease Chain A 1699 1927 - -
Cre08g1276 2249 ProSiteProfiles C2 domain profile. 1231 1355 IPR000008 -
Cre08g1276 2249 SMART C2_3c 1250 1354 IPR000008 -
Cre08g1276 2249 CDD C2_plant_PLD 1243 1377 - -
Cre08g1276 2249 Pfam Gag1-like, clamp domain 2144 2249 IPR025124 -
Cre08g1276 2249 SMART pld_4 1883 1910 IPR001736 GO:0003824(InterPro)
Cre08g1276 2249 SMART pld_4 1555 1593 IPR001736 GO:0003824(InterPro)
Cre08g1276 2249 Pfam RNA dependent RNA polymerase 417 999 IPR007855 GO:0003968(InterPro)
Cre08g1276 2249 PANTHER RNA-DEPENDENT RNA POLYMERASE 13 1501 IPR007855 GO:0003968(PANTHER)|GO:0003968(InterPro)|GO:0030422(PANTHER)|GO:0031380(PANTHER)
Cre08g1276 2249 Gene3D Endonuclease Chain A 1431 1679 - -
Cre08g1276 2249 FunFam Phospholipase D delta 1430 1674 - -
Cre08g1276 2249 Pfam Phospholipase D C terminal 1955 2026 IPR024632 -
Cre08g1276 2249 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1555 1593 IPR001736 GO:0003824(InterPro)
Cre08g1276 2249 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1883 1910 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1981 Cre-Chr6:27250679 Cre08g1276 Cre-Chr8:25900790 6.50E-38 dispersed
Cre07g1625 Cre-Chr7:31727951 Cre08g1276 Cre-Chr8:25900790 0.00E+00 dispersed
Cre08g0730 Cre-Chr8:20344207 Cre08g1276 Cre-Chr8:25900790 1.50E-19 dispersed
Cre08g1276 Cre-Chr8:25900790 Cre09g0266 Cre-Chr9:2711393 0.00E+00 dispersed
Cre06g2553 Cre-Chr6:33141910 Cre08g1276 Cre-Chr8:25900790 3.90E-151 transposed
Cre09g1871 Cre-Chr9:37284239 Cre08g1276 Cre-Chr8:25900790 1.80E-161 transposed
Cre09g1884 Cre-Chr9:37432670 Cre08g1276 Cre-Chr8:25900790 9.90E-90 transposed
Cre11g0790 Cre-Chr11:5114600 Cre08g1276 Cre-Chr8:25900790 5.80E-16 wgd
Cre07g1623 Cre-Chr7:31710607 Cre08g1276 Cre-Chr8:25900790 4.00E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1276 K11699 - csv:101217108 2271.51