Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1283 ATGGAGCTTCAACTTGGCCTCTCTCTTCCCCTTCATAACCACCCCATCCATTGCAACCCTCCTACTTCCAAAGATCCACCCATTATTGGAAACGATCACCTAATTCCTCAAACTTTGCCTTTGCTGTCTTGGAATGATAAGCCTAAGGATGAAGAAGACCCACACCACCCTAGAGGAACACATTTTCGCAACATTCAGAAGAAAGATGAAGAGAAGAACCAAGCAATGGGATGGCCACCCATTGAGTCATGGAGGAAGAAGGCCCTTCATTGGGATCCACAACCGCCACAGACGGCAGAGAATCGCCGTCGCCGTCCTGTAGTTGCAGATGAAAGTAACCAAAATGGTGGACAAAATTCATTGTTCGTGAAAGTGAAAATGGAAGGGGTAGCAATAGCAAGGAAACTCGATTTAAGGCTCTATCATTCCCATCAATCTCTCAAAACTGCTCTCATCGCCATGTTCGCCACATATAAGGCAATTGATCACAACGGTTGGGATTTTACGTTGATCTATGAAGACCGAGATGGTGATTGGATTCTTGCAGAAGATCTTCCATGGAATTCCTTTGTCGAGTCTGTACAGCGCCTCAAGATTCTAGTTCGAAAGAGAAACAAAGAATGA 624 45.03 MELQLGLSLPLHNHPIHCNPPTSKDPPIIGNDHLIPQTLPLLSWNDKPKDEEDPHHPRGTHFRNIQKKDEEKNQAMGWPPIESWRKKALHWDPQPPQTAENRRRRPVVADESNQNGGQNSLFVKVKMEGVAIARKLDLRLYHSHQSLKTALIAMFATYKAIDHNGWDFTLIYEDRDGDWILAEDLPWNSFVESVQRLKILVRKRNKE 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25956655 25957969 - CrPI670011_08g012830.1 Cre08g1283 506201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1283 207 ProSiteProfiles PB1 domain profile. 120 204 IPR053793 -
Cre08g1283 207 MobiDBLite consensus disorder prediction 43 74 - -
Cre08g1283 207 MobiDBLite consensus disorder prediction 91 116 - -
Cre08g1283 207 SUPERFAMILY CAD & PB1 domains 113 199 - -
Cre08g1283 207 Pfam AUX/IAA family 164 200 IPR033389 -
Cre08g1283 207 Pfam AUX/IAA family 29 159 IPR033389 -
Cre08g1283 207 Gene3D - 115 207 - -
Cre08g1283 207 MobiDBLite consensus disorder prediction 45 74 - -
Cre08g1283 207 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 202 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1283 K14484 - - csv:101206679 330.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2000 Cre-Chr6:27521568 Cre08g1283 Cre-Chr8:25956655 2.60E-18 dispersed
Cre08g1283 Cre-Chr8:25956655 Cre09g2071 Cre-Chr9:39761504 8.00E-18 dispersed
Cre05g1850 Cre-Chr5:30661512 Cre08g1283 Cre-Chr8:25956655 2.20E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g491 . Blo12g01074 . Bda03g00073 . Bpe02g00558 . . Cmo05g00379 . . Cma05g00378 Car09g00399 . . . Cpe06g00336 Bhi04g00943 . . . . . Lcy13g1796 . . . . . . . . . . . Lsi04g02124 Csa03g04331 Chy04g00369 Cme03g01608 . . . Bda13g01258 . Bpe04g00058 . . Sed13g2021 . Cmo09g00462 Cma09g00454 . . Car05g00321 Cpe11g00323 Cpe02g00449 Bhi09g02234 Tan01g3641 Cmetu04g2772 . Hepe01g2017 Mch11g0553 . Cla08g01340 Cam08g1802 Cec08g1381 Cco08g1509 Clacu08g1496 . Cre08g1283 Lsi08g01211 . Chy03g01113 Cme04g00412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013198 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 0 0 0 1 1 1 0 0 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54211 PF02309 AUX_IAA 3.40E-21 CL0072 Cre TR