Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1299 ATGGCTTTTCGTAACCAGCTCTCTCGGGACCTTCCTCTCCATTACGCGAACCAGCCTCAACAGCAGCAACCGGAACGGCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAGCTCGCCGACCACTCTCCGGGTGGCGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCACGACGACCGCTGCGGATAACATCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCTGTGGTATCTCACCCCTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCAAAGCGATGTTATCGATGACGTCACTGATGCCGCCGATGCTATGATTGGCGCTACTGCCACTTTGTCGCGTGAATCGGATGATTTGAAGAACAACAGCAGCGGCGGGGGAGGGGAGGGGGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGGAGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAACAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTGGACCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCTCAGCCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAGCATGTTCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGACGACGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCATGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCGCATTCAAAATGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAACTGAAGCAGATAAATAACTGGTTTATTAATCAGAGGAAGAGGAATTGGCATACAAATCCGTCAAGCTCAACAACCTTGAAGACTAAACGCAAAAGTAATGCAGGTGAAGCAACTAGCAACGACCATCCATAG 1404 49.07 MAFRNQLSRDLPLHYANQPQQQQPERPLSDNTLRSILSDQLADHSPGGDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETTTTAADNINTDFLNLHTTAPNSVVSHPSGQWLSRPILHRNQSDVIDDVTDAADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNGGAHGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSSSTTLKTKRKSNAGEATSNDHP 467
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 26057183 26061281 - CrPI670011_08g012990.1 Cre08g1299 506217
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1299 467 SMART KNOX1_2 191 235 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre08g1299 467 SMART KNOX2_2 247 302 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre08g1299 467 MobiDBLite consensus disorder prediction 436 457 - -
Cre08g1299 467 MobiDBLite consensus disorder prediction 436 467 - -
Cre08g1299 467 MobiDBLite consensus disorder prediction 147 182 - -
Cre08g1299 467 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre08g1299 467 Gene3D - 380 441 - -
Cre08g1299 467 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677(InterPro)
Cre08g1299 467 MobiDBLite consensus disorder prediction 147 162 - -
Cre08g1299 467 MobiDBLite consensus disorder prediction 40 60 - -
Cre08g1299 467 MobiDBLite consensus disorder prediction 11 28 - -
Cre08g1299 467 FunFam homeobox protein knotted-1-like 3 isoform X1 380 441 - -
Cre08g1299 467 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 174 442 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre08g1299 467 Pfam KNOX1 domain 193 233 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre08g1299 467 Pfam ELK domain 359 380 IPR005539 GO:0003677(InterPro)
Cre08g1299 467 SUPERFAMILY Homeodomain-like 381 445 IPR009057 -
Cre08g1299 467 SMART HOX_1 381 446 IPR001356 GO:0003677(InterPro)
Cre08g1299 467 Pfam KNOX2 domain 252 301 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre08g1299 467 CDD homeodomain 382 443 IPR001356 GO:0003677(InterPro)
Cre08g1299 467 MobiDBLite consensus disorder prediction 1 28 - -
Cre08g1299 467 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677(InterPro)
Cre08g1299 467 SMART ELK_2 359 380 IPR005539 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1299 Cre-Chr8:26057183 Cre09g2201 Cre-Chr9:41135487 5.60E-104 dispersed
Cre05g1822 Cre-Chr5:30367275 Cre08g1299 Cre-Chr8:26057183 1.00E-184 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54212 PF03791 KNOX2 3.20E-19 No_clan Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1299 - - - 0.0