Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1299 | ATGGCTTTTCGTAACCAGCTCTCTCGGGACCTTCCTCTCCATTACGCGAACCAGCCTCAACAGCAGCAACCGGAACGGCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAGCTCGCCGACCACTCTCCGGGTGGCGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCACGACGACCGCTGCGGATAACATCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCTGTGGTATCTCACCCCTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCAAAGCGATGTTATCGATGACGTCACTGATGCCGCCGATGCTATGATTGGCGCTACTGCCACTTTGTCGCGTGAATCGGATGATTTGAAGAACAACAGCAGCGGCGGGGGAGGGGAGGGGGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGGAGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAACAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTGGACCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCTCAGCCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAGCATGTTCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGACGACGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCATGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCGCATTCAAAATGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAACTGAAGCAGATAAATAACTGGTTTATTAATCAGAGGAAGAGGAATTGGCATACAAATCCGTCAAGCTCAACAACCTTGAAGACTAAACGCAAAAGTAATGCAGGTGAAGCAACTAGCAACGACCATCCATAG | 1404 | 49.07 | MAFRNQLSRDLPLHYANQPQQQQPERPLSDNTLRSILSDQLADHSPGGDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETTTTAADNINTDFLNLHTTAPNSVVSHPSGQWLSRPILHRNQSDVIDDVTDAADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNGGAHGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSSSTTLKTKRKSNAGEATSNDHP | 467 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26057183 | 26061281 | - | CrPI670011_08g012990.1 | Cre08g1299 | 506217 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1299 | 467 | SMART | KNOX1_2 | 191 | 235 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre08g1299 | 467 | SMART | KNOX2_2 | 247 | 302 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre08g1299 | 467 | MobiDBLite | consensus disorder prediction | 436 | 457 | - | - | |
Cre08g1299 | 467 | MobiDBLite | consensus disorder prediction | 436 | 467 | - | - | |
Cre08g1299 | 467 | MobiDBLite | consensus disorder prediction | 147 | 182 | - | - | |
Cre08g1299 | 467 | Pfam | Homeobox KN domain | 399 | 438 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cre08g1299 | 467 | Gene3D | - | 380 | 441 | - | - | |
Cre08g1299 | 467 | ProSiteProfiles | 'Homeobox' domain profile. | 379 | 442 | IPR001356 | GO:0003677(InterPro) | |
Cre08g1299 | 467 | MobiDBLite | consensus disorder prediction | 147 | 162 | - | - | |
Cre08g1299 | 467 | MobiDBLite | consensus disorder prediction | 40 | 60 | - | - | |
Cre08g1299 | 467 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
Cre08g1299 | 467 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 380 | 441 | - | - | |
Cre08g1299 | 467 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 174 | 442 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre08g1299 | 467 | Pfam | KNOX1 domain | 193 | 233 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre08g1299 | 467 | Pfam | ELK domain | 359 | 380 | IPR005539 | GO:0003677(InterPro) | |
Cre08g1299 | 467 | SUPERFAMILY | Homeodomain-like | 381 | 445 | IPR009057 | - | |
Cre08g1299 | 467 | SMART | HOX_1 | 381 | 446 | IPR001356 | GO:0003677(InterPro) | |
Cre08g1299 | 467 | Pfam | KNOX2 domain | 252 | 301 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre08g1299 | 467 | CDD | homeodomain | 382 | 443 | IPR001356 | GO:0003677(InterPro) | |
Cre08g1299 | 467 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cre08g1299 | 467 | ProSiteProfiles | ELK domain profile. | 359 | 379 | IPR005539 | GO:0003677(InterPro) | |
Cre08g1299 | 467 | SMART | ELK_2 | 359 | 380 | IPR005539 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g1299 | Cre-Chr8:26057183 | Cre09g2201 | Cre-Chr9:41135487 | 5.60E-104 | dispersed | |
Cre05g1822 | Cre-Chr5:30367275 | Cre08g1299 | Cre-Chr8:26057183 | 1.00E-184 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54212 | PF03791 | KNOX2 | 3.20E-19 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1299 | - | - | - | 0.0 |