Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1303 ATGCCTAGACCACAACAGAGATTTCGTGGTGTCCGACAGCGCCATTGGGGCTCTTGGGTCTCGGAAATCCGCCATCCCTTATTGAAAACTAGAATTTGGCTTGGTACTTTTGAGACGGCAGAAGACGCAGCACGAGCATACGATGAAGCCGCGCGCCTTATGTGTGGACCGAGAGCACGTACGAACTTCCCTTACGATGCCTCTCTCTCTCGCTCCTCGTCTTCACGCCTTCTCTCAGCTACTCTAACGGCTAAGCTCCACCGTTGCTACATGGCGTCTTTGCAGCTAACTAAGCAATCCTCCTCTGCTGCATGTCGCCCTCAAAATGACTTTTCCGTGGCATCCGGCATTGCTCCGGTCCAGCAGCGAGAGGAAGCGGATACAACGACGGCGAAGAAAGTAAAACTGGAGAGCGTGGATTGTGGGGAGCCGTTGATGATTGAAATGTTGGACGACGATCATATACAACAAATGATTGAGGAGCTGCTTGATTACGGTGGAATTGAGCTTCGTTCTGCTTCTGTTGTGCAGCCTCAACCCATTTGA 546 51.65 MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQNDFSVASGIAPVQQREEADTTTAKKVKLESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELRSASVVQPQPI 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26112391 26113034 + CrPI670011_08g013030.1 Cre08g1303 506221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1303 181 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cre08g1303 181 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1303 181 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 121 IPR050913 -
Cre08g1303 181 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1303 181 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1303 181 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1303 181 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1303 181 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1303 181 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cre08g1303 181 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1627 Cre-Chr7:31748616 Cre08g1303 Cre-Chr8:26112391 3.80E-27 dispersed
Cre08g1303 Cre-Chr8:26112391 Cre11g0788 Cre-Chr11:5085775 7.70E-25 dispersed
Cre08g1303 Cre-Chr8:26112391 Cre08g1304 Cre-Chr8:26119715 3.50E-54 tandem
Cre05g1816 Cre-Chr5:30276361 Cre08g1303 Cre-Chr8:26112391 9.00E-53 wgd
Cre07g1601 Cre-Chr7:31494092 Cre08g1303 Cre-Chr8:26112391 1.30E-37 wgd
Cre08g1303 Cre-Chr8:26112391 Cre09g0305 Cre-Chr9:2974566 5.00E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54213 PF00847 AP2 2.00E-11 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1303 - - - 0.0