Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1304 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTATTGAAGACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAAAGCTTACGATGAAGCTGCTCGCTTAATGTGCGGTCCAAGAGCAAGAACTAATTTCCCTTTCAACGCAAATGATTCCAATTCCTCTTCTTCTAAACTTCTCTCTCCCAATTTGACTGCAAAACTCCACCGTTGCTACATGGCGTCTCTTCATTTGCAGAAACCCGCCACCCATCGCTTCAATTCCGGCGCCGATGCGGCCGGGATTAAGCCCTTCACGGCGGAGGCAAAGACCCAAACGGAAACCGCCCATCAGCCTTTTGTGGCTCTGGAAGAGGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTATTGTGCCACCGTCTCCGGCGTTTTGA 495 48.89 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSPNLTAKLHRCYMASLHLQKPATHRFNSGADAAGIKPFTAEAKTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSPAF 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26119715 26120302 + CrPI670011_08g013040.1 Cre08g1304 506222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1304 164 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cre08g1304 164 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1304 164 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1304 164 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Cre08g1304 164 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1304 164 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1304 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 107 IPR050913 -
Cre08g1304 164 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1304 164 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1304 164 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1816 Cre-Chr5:30276361 Cre08g1304 Cre-Chr8:26119715 4.50E-52 dispersed
Cre06g1979 Cre-Chr6:27189274 Cre08g1304 Cre-Chr8:26119715 4.10E-25 dispersed
Cre07g1601 Cre-Chr7:31494092 Cre08g1304 Cre-Chr8:26119715 2.00E-38 dispersed
Cre08g1304 Cre-Chr8:26119715 Cre09g0305 Cre-Chr9:2974566 2.30E-44 dispersed
Cre08g1303 Cre-Chr8:26112391 Cre08g1304 Cre-Chr8:26119715 3.50E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54214 PF00847 AP2 9.50E-12 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1304 - - - 0.0