Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1304 | ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTATTGAAGACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAAAGCTTACGATGAAGCTGCTCGCTTAATGTGCGGTCCAAGAGCAAGAACTAATTTCCCTTTCAACGCAAATGATTCCAATTCCTCTTCTTCTAAACTTCTCTCTCCCAATTTGACTGCAAAACTCCACCGTTGCTACATGGCGTCTCTTCATTTGCAGAAACCCGCCACCCATCGCTTCAATTCCGGCGCCGATGCGGCCGGGATTAAGCCCTTCACGGCGGAGGCAAAGACCCAAACGGAAACCGCCCATCAGCCTTTTGTGGCTCTGGAAGAGGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTATTGTGCCACCGTCTCCGGCGTTTTGA | 495 | 48.89 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSPNLTAKLHRCYMASLHLQKPATHRFNSGADAAGIKPFTAEAKTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSPAF | 164 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26119715 | 26120302 | + | CrPI670011_08g013040.1 | Cre08g1304 | 506222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1304 | 164 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677(InterPro) | |
Cre08g1304 | 164 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1304 | 164 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1304 | 164 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 66 | - | - | |
Cre08g1304 | 164 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1304 | 164 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1304 | 164 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 107 | IPR050913 | - | |
Cre08g1304 | 164 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1304 | 164 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1304 | 164 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1816 | Cre-Chr5:30276361 | Cre08g1304 | Cre-Chr8:26119715 | 4.50E-52 | dispersed | |
Cre06g1979 | Cre-Chr6:27189274 | Cre08g1304 | Cre-Chr8:26119715 | 4.10E-25 | dispersed | |
Cre07g1601 | Cre-Chr7:31494092 | Cre08g1304 | Cre-Chr8:26119715 | 2.00E-38 | dispersed | |
Cre08g1304 | Cre-Chr8:26119715 | Cre09g0305 | Cre-Chr9:2974566 | 2.30E-44 | dispersed | |
Cre08g1303 | Cre-Chr8:26112391 | Cre08g1304 | Cre-Chr8:26119715 | 3.50E-54 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54214 | PF00847 | AP2 | 9.50E-12 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1304 | - | - | - | 0.0 |