Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1319 ATGGTTAGTTGGAGCGAGCTCACCACCCAGGATAATGGCTGTAGGAAAGGTGAATCTATAGGCATAGTGCATCTAGTATATGTGCCATCTTTCATTCCACCTCCATTGGCATCCAAGGGAAAAGAGTCTGACAAGAAGGAGCTGGAAAAGCCAAAGGAGAAAGAAAAGGGGAAGTCTAGGAACATCGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGCTGAGGGAAAGACGAAATCAAGATCGTGAACATTGGCGTGACGGGCGCCATGGAGAAATCTCAACACCATCTAGTCGATTTGATGAACTGCCTGATGACTTTGATCCTAGTGGAAAGTTCCCTGGATCATTTGATGATGGAGATCCTCAAACGACTAACCTTTATGTTGGAAATTTATCTCCACAGGTTGATGAGAATTTTCTCCTTCGAACTTTTGGGAGATTTGGACCAATTGCTAGTGTAAAGATAATGTGGCCAAGGACAGAGGAGGAACGAAGACGGCAAAGAAATTGTGGATTTGTAGCTTTCATGAATAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAGGGAGTTGTTGTTTACGGGTATGAGCTGAAAATTGGATGGGGAAAGTCTGTTGCTCTTCCATCCCAAGCATTACCTGCGCCTCCTCCAGGTCATATGGCCATTAGAAGTAAGGAGGGTGGCACTGTTATCTTATCTGGTTCATCAGGACCGCCAGTCACCTCTGTCCCAAATCAAAATTCTGAACTGGTTCTGACACCCAACATTCCTGATATTACTGTTGAACCACCTGAGGAGGATCATCTCCGCCATGTCATTGACACTATGGCTCTTTATGTTCTGGATGGAGGTTGTGTCTTTGAACAAGCTATCATGGAGAGGGGTCGGGGAAATCCTCTTTTCAACTTCTTGTTTGAGCTTGGTTCAAAAGAACATACATACTATGTTTGGCGACTTTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACGGGTAGTGGGAGATGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGCTTGAGAAGGAGTCTGGTCCCACTTATGCTGCTGGAAGAAGCAGACGCGTGGAGCTTGAAAGAACATTAACTGATTCACAAAGGGATGAGTTTGAGGACATGCTTCGGGCATTGACACTAGAAAGGAGTCAGATAAAGGAAGCAATGGGGTTTGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCTTTAACGCTTAGAGAAACTCCTATTCCAACCAAAGTTGCAAGGTTGATGCTTGTGTCTGATATCCTTCATAACAGTAGTGCTCCTGTAAAGAATGCATCTGCATACCGCACGAAATTTGAAGCAACATTACCTGACATCATTGAGAGCTTCAATGATCTATATCGCAGCATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTATTAAAATTATTGCAAGTATGGTCCGATTGGTTTCTGTTTTCAGATGCTTATGTGAATGGATTGCGAGCCACGTTCCTTCGCTTGGGAAACTCTGGTGTGATCCCTTTTCATTCGTTATGTGGTGATGCCCCTGAGATTGAACGGAAGGCCAATTGTGATGATTTAGGAGATGGGAGTAAAATCAATCAAGATGCTGAATTGGCAATGGGAAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTTGGAGAATTGGAAAGAAGGTGCAGGCATAATGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTAAGTCTTGAAGAGGCAGAAAAACAGAGTGGATATGAGCTTGATGAAGACTTAAAATATAGTAATTCTCATTCTGGAAGATATTCAAGTAGCTCAAGAGAGACTAAAGTTGAACGAGATCCAGCAGAAATTTCTGGTTGGAACCGTTTTGGGGATGACGAGCCAGATTTCCAAAGGATGGGTTCTGTGCCTATGGCTCAAACTCTTTCCATTCCACAGCCTGAACTAAAAGGCTTCACAAAGTCTGGGAAAAATGACCCTGTTTTGCCTGCCTCTAAATGGGCTAGGGAGGATGATGAAAGCGACAATGAGCAAAAAGGAGGTAGTAGGGGTCTCGGTTTAAGTTATTCATCTTCTGGAAGTGAAAATGCAGGTGATGGTCCTAGTAAAGCTGATGAGATGGAGATTACTACGGAGGCAAGTGTCCTTATGCAACCTGATAGTGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGACGTGTAGAGGTGGCTTTGATTGAATATCGTGAGTCCTTGGAAGAACGGGGCATCAAAAGTGCAGAGGAAATAGAGAGGAGAGTTTTGATATATCGGAAACAACTAGAATCTGAATATGGACTGTCAGATTCCAATGAGACTGCTTCAAGGAAGAAGAGGAGGGATAGATCGGATGATGGCCATGATTCATCAAGGAAGCTGCAGCGTGGCCAGAGCCATAGTGATAGTCCAGTACGAAAGTCATCGAACCGGGACAGAGACAGGGAAAATGACGTGGACAGGGAGCGAGAAAGATCACGAGACAGGGACCGGGAAAAGAGTGGAAGCAGAGAAAGGGATGATCACGAACGAGATAGAGGTAAAGAAAGAGATAGGGATAGGAGAAAACGTGGAAAATAA 2697 44.27 MVSWSELTTQDNGCRKGESIGIVHLVYVPSFIPPPLASKGKESDKKELEKPKEKEKGKSRNIDHFMEELKHEQELRERRNQDREHWRDGRHGEISTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSSGPPVTSVPNQNSELVLTPNIPDITVEPPEEDHLRHVIDTMALYVLDGGCVFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEKESGPTYAAGRSRRVELERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIIESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVIPFHSLCGDAPEIERKANCDDLGDGSKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEAEKQSGYELDEDLKYSNSHSGRYSSSSRETKVERDPAEISGWNRFGDDEPDFQRMGSVPMAQTLSIPQPELKGFTKSGKNDPVLPASKWAREDDESDNEQKGGSRGLGLSYSSSGSENAGDGPSKADEMEITTEASVLMQPDSGLNEEQRQKLRRVEVALIEYRESLEERGIKSAEEIERRVLIYRKQLESEYGLSDSNETASRKKRRDRSDDGHDSSRKLQRGQSHSDSPVRKSSNRDRDRENDVDRERERSRDRDREKSGSRERDDHERDRGKERDRDRRKRGK 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26315149 26325202 + CrPI670011_08g013190.1 Cre08g1319 506237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1319 898 SMART rrm1_1 127 203 IPR000504 GO:0003723(InterPro)
Cre08g1319 898 MobiDBLite consensus disorder prediction 811 891 - -
Cre08g1319 898 Pfam Surp module 273 325 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cre08g1319 898 SUPERFAMILY RNA-binding domain, RBD 119 217 IPR035979 GO:0003676(InterPro)
Cre08g1319 898 Coils Coil 758 778 - -
Cre08g1319 898 Coils Coil 388 408 - -
Cre08g1319 898 MobiDBLite consensus disorder prediction 715 732 - -
Cre08g1319 898 Gene3D Surp module 261 330 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cre08g1319 898 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 207 IPR000504 GO:0003723(InterPro)
Cre08g1319 898 MobiDBLite consensus disorder prediction 798 898 - -
Cre08g1319 898 SUPERFAMILY ENTH/VHS domain 385 524 IPR008942 -
Cre08g1319 898 CDD cwf21_RRC1-like 757 806 IPR047491 -
Cre08g1319 898 CDD RRM_SR140 125 208 IPR035009 -
Cre08g1319 898 MobiDBLite consensus disorder prediction 624 667 - -
Cre08g1319 898 MobiDBLite consensus disorder prediction 698 713 - -
Cre08g1319 898 SMART 558neu5 390 525 IPR006569 -
Cre08g1319 898 SMART cwf21_2 757 806 IPR013170 -
Cre08g1319 898 Gene3D - 37 209 IPR012677 -
Cre08g1319 898 Pfam cwf21 domain 758 804 IPR013170 -
Cre08g1319 898 SUPERFAMILY Surp module (SWAP domain) 249 330 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cre08g1319 898 Pfam RNA recognition motif 128 201 IPR000504 GO:0003723(InterPro)
Cre08g1319 898 Gene3D - 757 808 - -
Cre08g1319 898 SMART surpneu2 273 327 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cre08g1319 898 MobiDBLite consensus disorder prediction 33 123 - -
Cre08g1319 898 PANTHER RNA PROCESSING PROTEIN LD23810P 44 799 IPR051485 GO:0003723(PANTHER)|GO:0005634(PANTHER)
Cre08g1319 898 MobiDBLite consensus disorder prediction 682 763 - -
Cre08g1319 898 MobiDBLite consensus disorder prediction 638 663 - -
Cre08g1319 898 Pfam CID domain 390 518 IPR006569 -
Cre08g1319 898 ProSiteProfiles CID domain profile. 383 528 IPR006569 -
Cre08g1319 898 ProSiteProfiles SURP motif repeat profile. 275 318 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cre08g1319 898 MobiDBLite consensus disorder prediction 39 109 - -
Cre08g1319 898 Gene3D - 384 528 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1319 K12842 - - csv:101209274 1529.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40