Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1331 | ATGGCTTCCAAGCTTTGTGACTCCTGTAAGTCGGCCACCGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTTTGCCTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTTTGCGAGCAAGCTCCTGCGCATGTAACCTGCAAGGCTGATGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTCGCTCGCCGTCACGAGCGAGTTCCCGTCACGCCTTTCTACGACACCTCCAACTCCGACAACTCACTCGCCGTTAAACCTAGCGCTGCAATCAACTTCCTCGATGACCGTTACTTCTCCGATGTCGACGGTGATGCCGCTGATGTTAGTAGAGAAGAAGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTAGATCCGAAATTGGAAGCGCAAGAGCAAAACAGCTCCGGCGCCGATGGAGTTGTTCCGGTTCAGAGCAAAGGCGTTAATCTCTCATCCGTAAACGATCGCTGCTTCGGCATAGATTTCCCCAGCACCAAGTCGTTCCCGTACGGTTACAATCCTCAGTCAATCAGTCACAGCGTATCATCCTCTTCGATTGAGGTTGGAGTTGTGCCGGATGGGAACGCGATGACGGATGTATCAAATCCGTACACGAAACCGTCGACGGAATCGACGGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAATTCGAAAAGACGATCCGATACGCATCTCGTAAGGCTTACGCCGAGACGAGACCTCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTTGACAGAGTGAGTGGATACGGCGTCGTTCCGTCCTTCTAA | 1014 | 53.25 | MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLAVKPSAAINFLDDRYFSDVDGDAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVNLSSVNDRCFGIDFPSTKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESTVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26391862 | 26392993 | - | CrPI670011_08g013310.1 | Cre08g1331 | 506249 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1331 | 337 | CDD | Bbox1_BBX-like | 48 | 91 | IPR049808 | - | |
Cre08g1331 | 337 | CDD | Bbox1_BBX-like | 5 | 48 | IPR049808 | - | |
Cre08g1331 | 337 | Pfam | B-box zinc finger | 46 | 91 | IPR000315 | GO:0008270(InterPro) | |
Cre08g1331 | 337 | Pfam | B-box zinc finger | 4 | 42 | IPR000315 | GO:0008270(InterPro) | |
Cre08g1331 | 337 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 48 | IPR000315 | GO:0008270(InterPro) | |
Cre08g1331 | 337 | ProSiteProfiles | CCT domain profile. | 276 | 318 | IPR010402 | GO:0005515(InterPro) | |
Cre08g1331 | 337 | ProSiteProfiles | Zinc finger B-box type profile. | 44 | 91 | IPR000315 | GO:0008270(InterPro) | |
Cre08g1331 | 337 | SMART | bboxneu5 | 1 | 48 | IPR000315 | GO:0008270(InterPro) | |
Cre08g1331 | 337 | SMART | bboxneu5 | 49 | 91 | IPR000315 | GO:0008270(InterPro) | |
Cre08g1331 | 337 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 4 | 320 | IPR045281 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro) | |
Cre08g1331 | 337 | Pfam | CCT motif | 276 | 318 | IPR010402 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g1886 | Cre-Chr7:34293030 | Cre08g1331 | Cre-Chr8:26391862 | 9.80E-07 | dispersed | |
Cre07g1969 | Cre-Chr7:35135698 | Cre08g1331 | Cre-Chr8:26391862 | 1.00E-28 | dispersed | |
Cre08g1331 | Cre-Chr8:26391862 | Cre11g1658 | Cre-Chr11:27879163 | 8.90E-43 | dispersed | |
Cre08g1331 | Cre-Chr8:26391862 | Cre06g2174 | Cre-Chr6:29583603 | 4.70E-68 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54217 | PF00643 | zf-B_box | 3.60E-06 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1331 | - | - | - | 0.0 |