Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1331 ATGGCTTCCAAGCTTTGTGACTCCTGTAAGTCGGCCACCGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTTTGCCTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTTTGCGAGCAAGCTCCTGCGCATGTAACCTGCAAGGCTGATGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTCGCTCGCCGTCACGAGCGAGTTCCCGTCACGCCTTTCTACGACACCTCCAACTCCGACAACTCACTCGCCGTTAAACCTAGCGCTGCAATCAACTTCCTCGATGACCGTTACTTCTCCGATGTCGACGGTGATGCCGCTGATGTTAGTAGAGAAGAAGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTAGATCCGAAATTGGAAGCGCAAGAGCAAAACAGCTCCGGCGCCGATGGAGTTGTTCCGGTTCAGAGCAAAGGCGTTAATCTCTCATCCGTAAACGATCGCTGCTTCGGCATAGATTTCCCCAGCACCAAGTCGTTCCCGTACGGTTACAATCCTCAGTCAATCAGTCACAGCGTATCATCCTCTTCGATTGAGGTTGGAGTTGTGCCGGATGGGAACGCGATGACGGATGTATCAAATCCGTACACGAAACCGTCGACGGAATCGACGGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAATTCGAAAAGACGATCCGATACGCATCTCGTAAGGCTTACGCCGAGACGAGACCTCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTTGACAGAGTGAGTGGATACGGCGTCGTTCCGTCCTTCTAA 1014 53.25 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLAVKPSAAINFLDDRYFSDVDGDAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVNLSSVNDRCFGIDFPSTKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESTVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26391862 26392993 - CrPI670011_08g013310.1 Cre08g1331 506249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1331 337 CDD Bbox1_BBX-like 48 91 IPR049808 -
Cre08g1331 337 CDD Bbox1_BBX-like 5 48 IPR049808 -
Cre08g1331 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Cre08g1331 337 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cre08g1331 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Cre08g1331 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515(InterPro)
Cre08g1331 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Cre08g1331 337 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Cre08g1331 337 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Cre08g1331 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 320 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro)
Cre08g1331 337 Pfam CCT motif 276 318 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1886 Cre-Chr7:34293030 Cre08g1331 Cre-Chr8:26391862 9.80E-07 dispersed
Cre07g1969 Cre-Chr7:35135698 Cre08g1331 Cre-Chr8:26391862 1.00E-28 dispersed
Cre08g1331 Cre-Chr8:26391862 Cre11g1658 Cre-Chr11:27879163 8.90E-43 dispersed
Cre08g1331 Cre-Chr8:26391862 Cre06g2174 Cre-Chr6:29583603 4.70E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54217 PF00643 zf-B_box 3.60E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1331 - - - 0.0