Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1345 ATGGCGACGCCGGTGAAAGTGTACGGACCGCCGTTGTCCACCGCTGTGTCCAGAGTCCTGGCCTGTCTTCTCGAGAAGGACGTTCAGTTTCAGCTCTTACCTGTGAACATGGCGAAAGGAGAACACAAAAGCCCTGAATATCTCAAGATTCAGCCATTCGGCCAAGTCCCTGCGTTCCAAGACGAAAGCATCTCTCTCTTCGAATCCAGAGCAATCTGCCGCTACATTTGCAACAAGCACGCGGAAAAGGGGAATAAAGGACTGTACGGACTGGATCAGTTAGGGAAAGCTTCGATCGATCAATGGATTGAAGCGGAGGGGCAAAACTTCAATCCGGCGAGCTCGATTCTGGTTTTTCAACTGGCTTTTGCGCCGAGGATGAAGGTGCCACAGGACGAGAAGGCGATTAAGCAGAACGAGGAGAAGGTTTCGAAGGTGCTCGATGTGTACGAGCAGAGGCTGGGAGAGAGTCGTTTTTTGGCCGGAGATGAGTTTTCGTTGGCCGATCTTTCTCATTTGCCCAATGGGCATTACCTGGTGAATGTGGCGGATAGGGCGGAGCTTTTCACGTCGAGGAAGAACGTGGAGCGGTGGTGGAATGAGATCTCCGGTCGGGAATCTTGGAAGGAGGTGGTTGAATTGCAGAACAAGGCATCTTCGTGA 663 52.19 MATPVKVYGPPLSTAVSRVLACLLEKDVQFQLLPVNMAKGEHKSPEYLKIQPFGQVPAFQDESISLFESRAICRYICNKHAEKGNKGLYGLDQLGKASIDQWIEAEGQNFNPASSILVFQLAFAPRMKVPQDEKAIKQNEEKVSKVLDVYEQRLGESRFLAGDEFSLADLSHLPNGHYLVNVADRAELFTSRKNVERWWNEISGRESWKEVVELQNKASS 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26506075 26506923 - CrPI670011_08g013450.1 Cre08g1345 506263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1345 220 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 217 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Cre08g1345 220 Pfam Glutathione S-transferase, C-terminal domain 121 206 IPR004046 -
Cre08g1345 220 FunFam Glutathione S-transferase F2 4 88 - -
Cre08g1345 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 220 IPR010987 -
Cre08g1345 220 SUPERFAMILY GST C-terminal domain-like 85 213 IPR036282 -
Cre08g1345 220 CDD GST_C_Phi 96 212 IPR034347 -
Cre08g1345 220 SFLD Glutathione Transferase (cytosolic) 4 215 IPR040079 -
Cre08g1345 220 SFLD Main.5: Phi-like 4 215 - -
Cre08g1345 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
Cre08g1345 220 CDD GST_N_Phi 4 79 - -
Cre08g1345 220 Gene3D Glutaredoxin 2 90 - -
Cre08g1345 220 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cre08g1345 220 Gene3D - 92 212 - -
Cre08g1345 220 SUPERFAMILY Thioredoxin-like 4 84 IPR036249 -
Cre08g1345 220 FunFam Glutathione S-transferase F2 91 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1345 K00799 - - csv:101213523 428.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1345 Cre-Chr8:26506075 Cre09g0575 Cre-Chr9:5406964 5.40E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g151 . . . . . . . . . . . . . . . . . Bhi04g00084 . . . . . . Cla08g01393 Cam08g1867 Cec08g1446 Cco08g1579 Clacu08g1561 . Cre08g1345 . . . Cone20ag0053 . . . Cme03g01542 . . Bda08g01187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01285 . Chy03g01050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005856 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 1 1 5 38