Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1354 ATGATTTCCGTTTGCTCTGCTAGAACAATTCAAGCTTCACCCTCTTCTATTCAGTTGTTTTTCCCTCGAAATCGTAGAAGAATCACTTCCGATGTTCTTCGATTTTCCACCAATCTCTCCACTAGATGCTCGGATGACGATGAATATGGTGAAGCTCAATCCGAACGGATAGCCAATTACGCCGGAATCAGACTGGAAGAGACCGTGGACGTAAATCCTGGTAAAGTTCGTCTTGATTCTTGGATATCTTGCCGCATTAACGGCATTAGTAGGGCTCGTGTTCAGTCCAGTATTAGGGCGGGACTAGTTTCAGTCAATGGCCGAATTATCGATAAGGTTTCTCACAATGTAAAAGCTGGGGATATGATCAATTGTACAATTTCCGAGTTGCAACCATTGAGAGCTGAACCCGAAGATATTGATCTGGATATAGTCTATGAAGATGCACATGTTTTAGTCGTAAACAAACCAGCGCACATGGTTGTTCATCCAGCACCTGGAAATGCGACAGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCAATGGTTGCAACATCAAATGGGGAGCATCCGTCGGATATGGATATTTCTGATGACGAGTTCAGTTCAATTGAAATTTTTTCTAAAGTTTCTGAGGCACCTATTCGTCCTGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGATTGCTTGTTGTTGCCAAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTCAAGCAACACTCAATTGAGAGAGTTTATATCAGTCTCACATATGGAGTTCCTCCCTCAACTGCTGGACGTATTGAGGTACCAATTTGCCGTGATCCGAACAATCGTATACGCATGGCTGCAGTATCTGGAACAAATAACAATCCACATGCAAAGCACGCTGCTAGTAGGTACAAAGTTATGGAAATTTTAGCTCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACACATCAGATCCGTGCACACGCGAAGTATATGGGAATACCGTTACTTGGAGACGAGGTCTATGGAGGTACTAAGAGCATGGCCATGTCGCTGCTTCGAACTAAAACATCATCTAGTTGTCACAGCCAACTTATGCAACTTGTTTCTTCATTAGAGAGGCCCTGTCTTCATGCTCTGACTCTTGGGTTTGTACATCCTCACACAGGGAAGAACATACGATTTTCATGCCCACCTCCAACAGATTTTGCTGAAATTTTGAGTCAGCTTCGTGAAATTGGCACAAAAAAGTTGCAGGCTACCAAATCTTTGCTGGGAGCCTCCAACATTGAGAAGGGAATATTCCAGAATGCTCAATAA 1344 43.3 MISVCSARTIQASPSSIQLFFPRNRRRITSDVLRFSTNLSTRCSDDDEYGEAQSERIANYAGIRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAGDMINCTISELQPLRAEPEDIDLDIVYEDAHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSNGEHPSDMDISDDEFSSIEIFSKVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTYGVPPSTAGRIEVPICRDPNNRIRMAAVSGTNNNPHAKHAASRYKVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTKTSSSCHSQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFAEILSQLREIGTKKLQATKSLLGASNIEKGIFQNAQ 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26594694 26598958 - CrPI670011_08g013540.1 Cre08g1354 506272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1354 447 FunFam RNA pseudouridine synthase 2 chloroplastic 63 131 - -
Cre08g1354 447 ProSitePatterns Rlu family of pseudouridine synthase signature. 223 237 IPR006224 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cre08g1354 447 SUPERFAMILY Pseudouridine synthase 136 419 IPR020103 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cre08g1354 447 CDD S4 76 155 - -
Cre08g1354 447 Pfam RNA pseudouridylate synthase 150 337 IPR006145 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cre08g1354 447 CDD PseudoU_synth_RluA_like 151 392 IPR006145 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cre08g1354 447 Gene3D - 61 131 IPR036986 GO:0003723(InterPro)
Cre08g1354 447 SMART s4_6 76 138 IPR002942 GO:0003723(InterPro)
Cre08g1354 447 ProSiteProfiles S4 RNA-binding domain profile. 76 149 - -
Cre08g1354 447 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 87 415 IPR050188 -
Cre08g1354 447 NCBIfam RluA family pseudouridine synthase 76 419 IPR006225 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cre08g1354 447 Gene3D Pseudouridine synthase 133 407 - -
Cre08g1354 447 SUPERFAMILY Alpha-L RNA-binding motif 75 163 - -
Cre08g1354 447 Pfam S4 domain 76 123 IPR002942 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1354 K06180 - - csv:101213921 777.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0416 Cre-Chr1:3532730 Cre08g1354 Cre-Chr8:26594694 2.70E-15 dispersed
Cre02g1822 Cre-Chr2:31518054 Cre08g1354 Cre-Chr8:26594694 1.20E-12 dispersed
Cre08g1011 Cre-Chr8:23210735 Cre08g1354 Cre-Chr8:26594694 6.10E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g167 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01399 Cam08g1878 Cec08g1455 Cco08g1589 Clacu08g1570 . Cre08g1354 . Cone7ag1911 . . . . . Cme03g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01295 . Chy03g01043 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005129 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 4 1 36