Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1359 ATGTCTAATAATCTCATCTTCACCTTTATTCTCCTTTTTTACTCCCTTCTTCCCTCTTTCAATGCCTTGAGCCATCGTTACTATGACCACACATGCCCTAATCTCGAGTCCATTGTTGCCCGAGAAGTCCACTTAGCCACTGCCAACGACAAGACCGTCCCTGCTGCATTGCTTCGAATGCACTTCCATGATTGTTTCATCAGAGGTTGTGATGGCTCTGTGCTCTTGGACTCCAAGGGGAAGAACACAGCTGAAAAAGATGGCCCTCCCAACATATCCCTCCATGCTTTTTATGTCATTGACAATGCCAAGAAAGCCATTGAATCTACCTGCCCTGGCGTCGTTTCTTGCGCTGATATCTTAGCCCTCGCTGCTCGAGATGCCGTTGTTTTGTCTGGAGGTCCTCATTGGGAAGTCCCAAAAGGAAGAAAAGATGGAAGAATCTCAAAAGCTATTGAAACTAGACAATTACCAGCTCCCACATTCAACTTCTCTCAGCTCCAACAAAGCTTCTCCCAAAGGGGCCTTTCTTTACAAGATCTTGTTGCTCTTTCAGGTGGCCACACTCTTGGATTCGCTCATTGCTCGTCGTTCCAAAACCGAATCCACAACTTCAACTCGAGCCTCGACGTCGACCCGTCATTGCAGCCGGCATTTGCTGCCAGCCTCCGGAGCATATGTCCGGCGAGAAACAAGGTGAAAAATGCGGGTTCGGCCATGGATTCAACTTCCACAGTATTTGACAATGTATATTTCAAGCTTCTTCTACAAGGGCGGAGCATTTTTTCATCAGATCAATCTTTGCTTTCAAATCCCAAAACAAAAGCTTTGGTTTCAAGATTTGCGAATGAACAACATCTCTTTGAGAAGGCTTTTGTGAAGTCAATGGTGAAGATGAGTCAGATCGCCGGCGCCGGCCAAGAAGTCCGGCTAAACTGCAGGGTGGTCAGATGA 954 46.86 MSNNLIFTFILLFYSLLPSFNALSHRYYDHTCPNLESIVAREVHLATANDKTVPAALLRMHFHDCFIRGCDGSVLLDSKGKNTAEKDGPPNISLHAFYVIDNAKKAIESTCPGVVSCADILALAARDAVVLSGGPHWEVPKGRKDGRISKAIETRQLPAPTFNFSQLQQSFSQRGLSLQDLVALSGGHTLGFAHCSSFQNRIHNFNSSLDVDPSLQPAFAASLRSICPARNKVKNAGSAMDSTSTVFDNVYFKLLLQGRSIFSSDQSLLSNPKTKALVSRFANEQHLFEKAFVKSMVKMSQIAGAGQEVRLNCRVVR 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26642739 26644013 - CrPI670011_08g013590.1 Cre08g1359 506277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1359 317 FunFam Peroxidase 158 299 - -
Cre08g1359 317 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 CDD secretory_peroxidase 23 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre08g1359 317 FunFam Peroxidase 26 163 - -
Cre08g1359 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cre08g1359 317 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 Pfam Peroxidase 40 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 ProSiteProfiles Plant heme peroxidase family profile. 22 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 Gene3D Peroxidase, domain 2 158 299 - -
Cre08g1359 317 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g1359 317 Gene3D - 26 316 - -
Cre08g1359 317 PANTHER PEROXIDASE 25-RELATED 24 313 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0383 Cre-Chr4:13471115 Cre08g1359 Cre-Chr8:26642739 8.60E-72 dispersed
Cre05g0955 Cre-Chr5:8816769 Cre08g1359 Cre-Chr8:26642739 2.40E-97 dispersed
Cre05g1774 Cre-Chr5:29716072 Cre08g1359 Cre-Chr8:26642739 5.80E-63 dispersed
Cre08g1359 Cre-Chr8:26642739 Cre09g0450 Cre-Chr9:4322000 4.10E-66 dispersed
Cre04g1671 Cre-Chr4:35047850 Cre08g1359 Cre-Chr8:26642739 2.90E-120 transposed
Cre04g1662 Cre-Chr4:34969056 Cre08g1359 Cre-Chr8:26642739 4.30E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1359 K00430 - csv:101214403 574.704