Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1360 ATGGAGAAACTTTGTTTCGCATTTGCTTTCTCTCTCGCTCTCTCCAATTTTTTCTTCATTTCTGTCCATGCATTTACCGCGTCGGGATGGAACCCCGCCCATGCTACTTTCTATGGTGATAGCGATGCCTCGGGAACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACCAGACGGGTTACGGAACAAGGACGGCGGCGCTGAGCACGGCGTTGTTCAACGACGGCGCGTCGTGCGGTCAGTGTTTCAAGATGGTGTGCGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACGGTGACGGCCACCAATTTTTGCCCACCAAACTACGCTCTCCCAAACAACAATGGCGGATGGTGTAACCCTCCGCTTAAACATTTCGACATGGCTCAGCCTGCTTGGGAGAAGATCGGCATTTACAGAGGCGGAATCATCCCTGTTCTCTACCAAAGGGTTCCCTGCGTAAAGAAAGGAGGTGTGAGATTCACAGTAAATGGAAGAGATTATTTTGAACTAGTTTTGATAAGCAACGTGGGAGGAGCTGGGGACATCAAATCAGTGTCCATTAAAGGGTCAAAATCCAACAATTGGACCCCAATGTCAAGGAATTGGGGGGCCAATTGGCAGTCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGGTCACCACAAGTGATGGCCAAACCCAAGTTTTCAACAATGTTGTACCTTCATCTTGGAGATTTGGCCAAACTTTTGCAAGCAAGGTCCAATTCAGTTGA 777 48.65 MEKLCFAFAFSLALSNFFFISVHAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKMVCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISNVGGAGDIKSVSIKGSKSNNWTPMSRNWGANWQSNSYLNGQSLSFKVTTSDGQTQVFNNVVPSSWRFGQTFASKVQFS 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26648405 26650735 - CrPI670011_08g013600.1 Cre08g1360 506278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1360 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Cre08g1360 258 Pfam Lytic transglycolase 65 153 IPR009009 -
Cre08g1360 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Cre08g1360 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Cre08g1360 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Cre08g1360 258 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Cre08g1360 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Cre08g1360 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Cre08g1360 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Cre08g1360 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Cre08g1360 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cre08g1360 258 PANTHER EXPANSIN-A15 17 254 IPR002963 GO:0009664(InterPro)
Cre08g1360 258 SMART dpbb_1 65 153 IPR007112 -
Cre08g1360 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Cre08g1360 258 Gene3D - 163 258 IPR036749 -
Cre08g1360 258 CDD DPBB_EXPA_N 29 158 - -
Cre08g1360 258 FunFam Expansin 20 159 - -
Cre08g1360 258 FunFam Expansin 163 257 - -
Cre08g1360 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cre08g1360 258 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Cre08g1360 258 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Cre08g1360 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Cre08g1360 258 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Cre08g1360 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Cre08g1360 258 SUPERFAMILY Barwin-like endoglucanases 18 181 IPR036908 -
Cre08g1360 258 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Cre08g1360 258 Gene3D - 19 158 IPR036908 -
Cre08g1360 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1360 Cre-Chr8:26648405 Cre11g1052 Cre-Chr11:7965287 1.40E-93 dispersed
Cre08g1360 Cre-Chr8:26648405 Cre05g2585 Cre-Chr5:37029535 6.30E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1360 - - - 0.0