Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1364 ATGAGTGCGTCCAGGTTTATAAAGTGCGTCACGGTTGGTGATGGTGCCGTGGGTAAAACTTGTATGTTGATTTCCTATACAAGTAACACCTTCCCCACGGACTACGTGCCTACCGTTTTTGACAATTTCAGCGCCAATGTGGTGGTTGATGGAAGCACGGTCAACCTAGGATTATGGGATACTGCTGGTCAAGAGGATTACAATAGATTAAGACCACTGAGCTATAGAGGTGCTGATGTTTTTATTCTTGCTTTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAGTGGATTCCTGAATTGAGACATTATGCACCTGGTGTTCCAATAGTTCTTGTTGGAACTAAACTTGATCTTCGGGATGACAAGCAGTTCTTTGAAAACCACCCTGGTGCAGTTCCCATTTCCACTGTTCAGGGAGAGGAGTTGAGAAAAGTTATCGGAGCCCCGGCATACATTGAGTGTAGTTCAAAAACCCAGCAGGCATGGCACCTATCTAATGTGAAAGGAGTGTTCGATGCAGCCATTAAAGTGGTGCTCCAGCCGCCAAAGTCTAAGAAGAAGAAGAAGAAGTCACAGAATCATATCTTTAATCCATGTCATCCCAAGGAAGCGGCGAATGATGGACTGTATCGTACCGTATACGGCCCCAAGCTGACATTCCAAGATGCAAATAGAACAGTGATGATGTTTGTTTCTTTTTTGCAATCAGTTTGTTAG 729 44.17 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFFENHPGAVPISTVQGEELRKVIGAPAYIECSSKTQQAWHLSNVKGVFDAAIKVVLQPPKSKKKKKKSQNHIFNPCHPKEAANDGLYRTVYGPKLTFQDANRTVMMFVSFLQSVC 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26673252 26675760 - CrPI670011_08g013640.1 Cre08g1364 506282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1364 242 Gene3D - 5 196 IPR027417 -
Cre08g1364 242 CDD Rop_like 6 183 - -
Cre08g1364 242 FunFam rac-like GTP-binding protein RHO1 5 197 - -
Cre08g1364 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 182 IPR027417 -
Cre08g1364 242 SMART rab_sub_5 7 185 - -
Cre08g1364 242 ProSiteProfiles small GTPase Ras family profile. 2 232 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre08g1364 242 SMART ras_sub_4 4 185 - -
Cre08g1364 242 ProSiteProfiles small GTPase Rab1 family profile. 2 242 - -
Cre08g1364 242 NCBIfam small GTP-binding protein domain 7 144 IPR005225 GO:0005525(InterPro)
Cre08g1364 242 Pfam Ras family 8 182 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre08g1364 242 SMART rho_sub_3 9 185 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre08g1364 242 ProSiteProfiles small GTPase Rho family profile. 1 182 - -
Cre08g1364 242 PANTHER RHO FAMILY GTPASE 5 194 IPR003578 GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005856(PANTHER)|GO:0007163(PANTHER)|GO:0007264(InterPro)|GO:0008360(PANTHER)|GO:0019901(PANTHER)|GO:0030865(PANTHER)|GO:0031410(PANTHER)|GO:0032956(PANTHER)|GO:0042995(PANTHER)
Cre08g1364 242 PRINTS Transforming protein P21 ras signature 47 69 - -
Cre08g1364 242 PRINTS Transforming protein P21 ras signature 30 46 - -
Cre08g1364 242 PRINTS Transforming protein P21 ras signature 7 28 - -
Cre08g1364 242 PRINTS Transforming protein P21 ras signature 109 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1364 K04392 - - csv:101216083 351.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1505 Cre-Chr2:27231535 Cre08g1364 Cre-Chr8:26673252 2.50E-92 dispersed
Cre04g1955 Cre-Chr4:37038285 Cre08g1364 Cre-Chr8:26673252 3.10E-88 dispersed
Cre05g0393 Cre-Chr5:3578662 Cre08g1364 Cre-Chr8:26673252 6.40E-79 dispersed
Cre06g2550 Cre-Chr6:33122984 Cre08g1364 Cre-Chr8:26673252 4.10E-82 dispersed
Cre08g1364 Cre-Chr8:26673252 Cre11g0722 Cre-Chr11:4359528 8.50E-80 dispersed
Cre08g1364 Cre-Chr8:26673252 Cre06g1691 Cre-Chr6:13956547 4.50E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1147 Blo01g01606 . Bda01g00475 . Bpe02g00339 . . Bma01g02379 . Cmo12g00350 . . . . Sed02g0076 . Cpe07g00354 Bhi04g00124 Tan02g2834 Cmetu03g0402 . Hepe10g0168 . Lcy13g1898 Cla08g01409 Cam08g1889 Cec08g1466 Cco08g1599 Clacu08g1581 . Cre08g1364 Cone4ag2004 Cone7ag1901 Cone17ag1418 Cone20ag0065 . . . . . Blo18g00771 Bda08g01210 Bda01g01540 Bpe02g01737 Bpe05g00148 Bma01g00719 Bma05g00180 . . . Cma12g00399 Cma05g00318 . . Cpe11g00266 . . . . . . . . . . . . . . . Lsi08g01305 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272