Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1386 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTCCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCGAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCATTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGGGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTCGACGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCACAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCTGGAAGAAAATACTTCCAAGCAAGCGAAGCTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAAAAAAATTACCTCCGAAGGAATTCCTCACAGGATAA 1230 42.2 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNASDGRLAPDTHSTVATLDLKRAYDIDDSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGWERRGPQELNDEVGKLKDEVKSLYADERRLDELIRMKQELLRNLEENANHRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGLEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRILPLHNNIDDDYWFQSNSQKKLPPKEFLTG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26845408 26849529 + CrPI670011_08g013860.1 Cre08g1386 506304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1386 409 MobiDBLite consensus disorder prediction 28 72 - -
Cre08g1386 409 PANTHER TRANSCRIPTION FACTOR E2F 79 372 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Cre08g1386 409 MobiDBLite consensus disorder prediction 99 123 - -
Cre08g1386 409 Coils Coil 247 270 - -
Cre08g1386 409 Gene3D - 150 222 IPR036388 -
Cre08g1386 409 MobiDBLite consensus disorder prediction 55 72 - -
Cre08g1386 409 Gene3D - 227 337 - -
Cre08g1386 409 SUPERFAMILY E2F-DP heterodimerization region 232 335 IPR037241 -
Cre08g1386 409 CDD E2F_DD 231 335 IPR032198 GO:0046983(InterPro)
Cre08g1386 409 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre08g1386 409 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre08g1386 409 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Cre08g1386 409 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Cre08g1386 409 MobiDBLite consensus disorder prediction 99 154 - -
Cre08g1386 409 FunFam E2F transcription factor 1 149 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1386 K06620 - - csv:101211469 655.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2545 Cre-Chr2:38685177 Cre08g1386 Cre-Chr8:26845408 3.20E-59 dispersed
Cre06g2535 Cre-Chr6:32994835 Cre08g1386 Cre-Chr8:26845408 1.30E-07 dispersed
Cre08g1386 Cre-Chr8:26845408 Cre04g1133 Cre-Chr4:29955121 4.10E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g1295 . 37 392 E2F-DP Transcription Factor Family AT3G48160 56.7 2.4e-103 372.9
Cre10g1077 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 7.0e-60 228.0
Cre02g2545 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 5.8e-120 428.3
Cre04g1133 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.2 9.9e-120 427.6
Cre02g2545 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.2 4.2e-115 412.1
Cre04g1133 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.0e-97 354.4
Cre08g1386 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.4 3.3e-56 216.5
Cre02g2545 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.0e-63 238.4
Cre08g1386 . 151 401 E2F-DP Transcription Factor Family AT1G47870 52.6 4.5e-62 235.7
Cre10g1077 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 7.0e-60 228.0
Cre02g2545 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.2 4.2e-115 412.1
Cre04g1133 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.0e-97 354.4
Cre08g1386 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.4 3.3e-56 216.5
Cre02g2545 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 5.8e-120 428.3
Cre04g1133 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.2 9.9e-120 427.6
Cre02g2545 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.0e-63 238.4
Cre08g1386 . 151 401 E2F-DP Transcription Factor Family AT1G47870 52.6 4.5e-62 235.7
Cre01g1295 . 37 392 E2F-DP Transcription Factor Family AT3G48160 56.7 2.4e-103 372.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54218 PF16421 E2F_CC-MB 3.50E-26 No_clan Cre TF