Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1386 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTCCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCGAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCATTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGGGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTCGACGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCACAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCTGGAAGAAAATACTTCCAAGCAAGCGAAGCTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAAAAAAATTACCTCCGAAGGAATTCCTCACAGGATAA 1230 42.2 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNASDGRLAPDTHSTVATLDLKRAYDIDDSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGWERRGPQELNDEVGKLKDEVKSLYADERRLDELIRMKQELLRNLEENANHRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGLEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRILPLHNNIDDDYWFQSNSQKKLPPKEFLTG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26845408 26849529 + CrPI670011_08g013860.1 Cre08g1386 506304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1386 409 MobiDBLite consensus disorder prediction 28 72 - -
Cre08g1386 409 PANTHER TRANSCRIPTION FACTOR E2F 79 372 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Cre08g1386 409 MobiDBLite consensus disorder prediction 99 123 - -
Cre08g1386 409 Coils Coil 247 270 - -
Cre08g1386 409 Gene3D - 150 222 IPR036388 -
Cre08g1386 409 MobiDBLite consensus disorder prediction 55 72 - -
Cre08g1386 409 Gene3D - 227 337 - -
Cre08g1386 409 SUPERFAMILY E2F-DP heterodimerization region 232 335 IPR037241 -
Cre08g1386 409 CDD E2F_DD 231 335 IPR032198 GO:0046983(InterPro)
Cre08g1386 409 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre08g1386 409 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre08g1386 409 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Cre08g1386 409 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Cre08g1386 409 MobiDBLite consensus disorder prediction 99 154 - -
Cre08g1386 409 FunFam E2F transcription factor 1 149 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2545 Cre-Chr2:38685177 Cre08g1386 Cre-Chr8:26845408 3.20E-59 dispersed
Cre06g2535 Cre-Chr6:32994835 Cre08g1386 Cre-Chr8:26845408 1.30E-07 dispersed
Cre08g1386 Cre-Chr8:26845408 Cre04g1133 Cre-Chr4:29955121 4.10E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54218 PF16421 E2F_CC-MB 3.50E-26 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1386 K06620 - csv:101211469 655.21