Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1392 ATGGGAAGGTCTCGCTCATGCTTCCAAGTAATCACATGTGGTAGCGATTCAAAGGACGAAGATGAGATCGATGTACTTGAGAGTAAGGCGTCTAAAGACAAACGAGGCTGGAGTTTCCGTAAAAGATCTTCCCAGCATCGTGTGCTAAACAACACTGTGACCGCAGAAACTCCTCCTGTAGAGAAGGAGAACCTTGAAACTGCTACATTCGACTTCCAATCATCAGCCAACTCCACTGTTCCTGAGAAACCCACTATAATACACTTCACCAATGAGGAGACCCATGTGCCTAACATCGAGAATCCTAAAGGATCTGATAAGGTGGATGTTGCATCCGAAAATGAAAGTAAGGTCGATAGTGAGGTTCAGGAGTCTACTGTTGTTGTCATCCAGGCTGGTGTCAGGGGGCTCTTGGCACAGAAGGAGCTGATTAAACTTAAGAATGTAGTAAAGGTGCAAGCTGCTGTTCGTGGATTCTTGGTAAGGCGACATGCTGTGGGAACACTCCGCTGTGCTCAAGCCATTGTCAAAATGCAAGCTATTGTACGTGCTCGTCGTGCTCATCTCTCCCCTGAGGGATCATCCCTAGACGAGCTGCACAACAATAATGAGAAGGAAAATCCTGGTTCGAAGATCTTGGTGAAGGGAGAGATGACAAAATCCAACTTGAGATATATTTCAATTGAAAAGCTACTTAGCAATAGTTTTGCCCGGCAGTTGTTGGAATCAACACCAAGGAACAAACCAATCAAAATCAAGTGCGTTCCTTCCAAAAATGATTCTGCTTGGAAATGGTTGGAGCGCTGGATGGCCGTTTCATCATTGGATGTCTTGGAGCCGAAGAAAGAAGAATTAGTCCCTGGTCAAATGGAAGAAGAAACTGAGGAGCCGAAGGAAGAAGAATCAGACACTGAGCAATTGAAAAGAGAAATTGAGGAATCTCATCTTGAAGATCAAATTGACTCAAAACCGTTGTCTGAAACAGAAAATTTGAACTCCAGCACCATCAAATCAGTTTCCCTATCTGAAAGTGAAGATTTAATTACTTATGATGCCAGTAACTTACAATCTCAGACCTCCAGCTCTCCATCTTCATTAGTAAAGGATAATCTGGAGCAGCCTTTGCCTGAGACTGCTAGAATGCCTGAAGCCGAAGAGAAATCAACTAAGGTTAGTTCTGTACAACATCAGAAAATACAGATGGATGGTGTAGGTTTGCAAACAGAGTCAAACACCTCCTCTGATAAACCTCAGATGGACGTGGAGCAAGTCAATCCTCTGAAAAGATTAGCCCCCGAACAACTGGAGAATGAGGGTAAGAAATTTGTGCTTGGATCAAGAAAGGTGAACAATCCCTCATTTATCAATGCCCAGGCAAAATTTGAACAGTTGAGTTTGGCACCAGATTCAATTGGAACAATTAGTTCAATGCATCAAGATGATGGAATCGAATCTCATTCAGAAACAGTATCATCTACAGCGGATACTGTACCCAGGACGAAGGAGTCAAGTGCAGAGGAAAATATTGTTCTTCCTGCATCTAGGATAACTCAAGTTGGTGGCTCTGAATGTGGCACCGAGCTCTCTATTTCTTCCACCCTTGATTCACCTGATATATCTGAAGCAGGAGTGGCAGATCCACATGCAAATGATGTTTCAAAGAAAGGAGTCCAAGATCCTAGCAGTGACCTAAGCGTAGAAGCTGAAATCAAGGCTTCTACTAATCCAATGCAAAATGACATTCAACTTCCTGTGGATCAACCAGAAGAAGCTGGTGAATCTAACGGTCATTCCATCACTTCAGTAGCTGTTGTAGACTCTGCCCCAAGTGAATCAAAGCTAGAGAGGAGTTCATCAGATCAACAGAGAGAACAGGAGGCTGATACGGGTCATGATCATCCAACATATAAATCATCTCCAGAAGCTTCTCCAAGAAGTCATTTAACTGTTCCAGAATCCCAAGGAACACCTTCTAGTCAGGTATCAATAAAGGCTAAACGGGATAAATCTGATAAAACAGTCTCTTTCCTTAAGCAAAAGTCTTCATCAGCAGGAAAGAAATCACCATCCAGTTTAAATCGCAATTCTGGCTCGAGGAGTAGTACAGATAATTCTTACAAAGATCAGAAGTCTGGGAAGAGAAGAAATTCATTTGAAGCACGACAGGAAAATGTTGAAAAGGAATTAAGAGAGAGCAGTAGTAGTAGCTCTCTTCCTCATTTCATGCAAGCCACAGAATCCGCTAGAGCCAAGGCCCATTCGACCAACTCACCAAGATCAAGTCCGGATGTTCAAGATGGAGAAATATACATGAAGAAAAGGCATTCCTTACCTGCTGATGGCCGGCAAGGATCTCCACGCATTCAGCAGCAAACAACTCGAACCCAGCAGGGAGCGAAGGGAAATGAGAAAAAGTGGCGAAGGTAA 2427 43.35 MGRSRSCFQVITCGSDSKDEDEIDVLESKASKDKRGWSFRKRSSQHRVLNNTVTAETPPVEKENLETATFDFQSSANSTVPEKPTIIHFTNEETHVPNIENPKGSDKVDVASENESKVDSEVQESTVVVIQAGVRGLLAQKELIKLKNVVKVQAAVRGFLVRRHAVGTLRCAQAIVKMQAIVRARRAHLSPEGSSLDELHNNNEKENPGSKILVKGEMTKSNLRYISIEKLLSNSFARQLLESTPRNKPIKIKCVPSKNDSAWKWLERWMAVSSLDVLEPKKEELVPGQMEEETEEPKEEESDTEQLKREIEESHLEDQIDSKPLSETENLNSSTIKSVSLSESEDLITYDASNLQSQTSSSPSSLVKDNLEQPLPETARMPEAEEKSTKVSSVQHQKIQMDGVGLQTESNTSSDKPQMDVEQVNPLKRLAPEQLENEGKKFVLGSRKVNNPSFINAQAKFEQLSLAPDSIGTISSMHQDDGIESHSETVSSTADTVPRTKESSAEENIVLPASRITQVGGSECGTELSISSTLDSPDISEAGVADPHANDVSKKGVQDPSSDLSVEAEIKASTNPMQNDIQLPVDQPEEAGESNGHSITSVAVVDSAPSESKLERSSSDQQREQEADTGHDHPTYKSSPEASPRSHLTVPESQGTPSSQVSIKAKRDKSDKTVSFLKQKSSSAGKKSPSSLNRNSGSRSSTDNSYKDQKSGKRRNSFEARQENVEKELRESSSSSSLPHFMQATESARAKAHSTNSPRSSPDVQDGEIYMKKRHSLPADGRQGSPRIQQQTTRTQQGAKGNEKKWRR 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26919780 26923523 - CrPI670011_08g013920.1 Cre08g1392 506310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1392 808 MobiDBLite consensus disorder prediction 639 663 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 783 799 - -
Cre08g1392 808 PANTHER IQ-DOMAIN 5-RELATED 17 773 - -
Cre08g1392 808 Gene3D - 120 174 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 676 705 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 472 499 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 519 538 - -
Cre08g1392 808 ProSiteProfiles IQ motif profile. 123 151 - -
Cre08g1392 808 SMART iq_5 122 144 IPR000048 GO:0005515(InterPro)
Cre08g1392 808 SMART iq_5 145 166 IPR000048 GO:0005515(InterPro)
Cre08g1392 808 MobiDBLite consensus disorder prediction 393 420 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 766 780 - -
Cre08g1392 808 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515(InterPro)
Cre08g1392 808 Pfam Protein of unknown function (DUF4005) 732 799 IPR025064 -
Cre08g1392 808 MobiDBLite consensus disorder prediction 282 340 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 593 615 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 731 763 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 706 730 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 325 340 - -
Cre08g1392 808 ProSiteProfiles IQ motif profile. 145 174 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 616 635 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 472 808 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 567 582 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 301 324 - -
Cre08g1392 808 MobiDBLite consensus disorder prediction 376 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1392 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2023 Cre-Chr5:32237283 Cre08g1392 Cre-Chr8:26919780 2.30E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1073 . . . . . . . . . Cmo12g00367 . . . Car12g00394 . . Cpe07g00374 Bhi04g00242 . . . Hepe10g0137 . . Cla08g01436 Cam08g1916 Cec08g1492 . Clacu08g1606 . Cre08g1392 . . Cone17ag1391 . . . . . Blo17g00748 . . . . . . Bma05g00161 . . . Cma12g00416 Cma05g00295 Car05g00244 . Cpe11g00245 . . . . . . . . . . . . . . . Lsi08g01336 Csa02g02120 Chy03g01397 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002353 2 2 0 1 2 2 3 2 2 2 1 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 1 4 3 1 62