Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1393 ATGGAAGGGAAGAAGGGGAATAAGGGTTACGTGTGGGCAATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTGCCGCCAAGCTTTTCTCCTATACGTTAATTAGGTATGGACTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCCTCATTACAAGCTACAGGGACAAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTTGAAGAAGCATTATCATTTCAGTCTAACGCGCTGTCATTCATTACCATTTTGTTAAAGTTGATCAGTAGTTGGATCAGTTATTTGCCTATCAATGTAGAAGCCAGCAATCGCAATGATGAATACTTACTGACAAGTAGTACTTTGGAATCGTTCGCTTCATTTCAGTTCGATATTTTGCCGCTTGCTAAAAGTTGTGGCTGTTATAGTTTCAAGAATTCAACGCATTCAAACTTGCATCTCTTTAACACCAATGTACTATTTTCCAGTGGTTCTGCTTTAAGCTCAGAACTCGAAGCCGAAAAGTTGACTCCCGTTTACTTTCCTGGTTATAATGATCTGATGGAGGACGAGATGGGGAAGATGGGTCAGCCATTCGAGCTGACTGGAGTTTTGGAGTCACAAATGGATGACAGTGGACACCGTGAGAATGGACGGCACAAAGCAGATCAGTATAAGTCGGCTCAAGGTGGTCCGTGGATGATGCAGCATCAACCATCAATGAAGCAGATAATGACAATTATGGCTGAAAGAGATGCGGCCCTTCAAGAGAGGAATTTGGCCCTTTCCGAGAAGAAGGCTGCACTAGCGGAGCGAGACATGGCTTATCTACAGCGAGACGCTGCGATTGCAGAGAGAAACAATGCACTTTTGGAACGGGACAATGCCATTGCTACACTTCAGTATCGTGAAAACTCCCTAACAAATAACATGTCATGTCCACCAGGATGCCAAATTGCTAGAGGAGTGAAGCATATACATCATCCACAGCAACAACAACACACGCATGTGCCCCACATGAATGAGAGTAATTACAATTCCAGAGAAATGCATCCTTCAAACGATGCTTGCCCGGTATCCCCTGTTGCTTCTGAATCAACAAAGGCACGGCAAAACAAGCGTCCAAAGGAGGGAAAGACAGTTACAACACCAAACAAGAAGGTTTCAAAAGGTCCAAGGAAGGTCAAAAGAGAGGCTGAAGACTTGAATAAGGTAATGCTGGGCAAGTCACAAGAATGGAAGGATGGAATTGGGATCATGAGTGGAGGTGATGATCTTAATAAACAGTTGGTAGTATCAAAGTCGGATTGGAAGGGACAGGATTTAGGATTGAACCAGGTTGCCTTTGATGAATCAACCATGCCAGCTCCAATATGCTCCTGCACAGGAGTTATCAGACAATGCTACAAATGGGGAAATGGTGGATGGCAATCTGCATGTTGTACTACCACCATCTCAATGTATCCATTACCCGCTGTTCCCAACAAACGACACGCCCGACTCGGTGGTCGGAAAATGAGCGGAAGCGCTTTCAACAAGCTGCTTAGCCGCCTTGCAGCTGAAGGTCACGATCTGTCAGCTCCAGTTGATCTTAAAAATCACTGGGCAAAGCATGGAACAAATCGTTACATCACCATCAAGTAG 1671 44.58 MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLIRYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQSNALSFITILLKLISSWISYLPINVEASNRNDEYLLTSSTLESFASFQFDILPLAKSCGCYSFKNSTHSNLHLFNTNVLFSSGSALSSELEAEKLTPVYFPGYNDLMEDEMGKMGQPFELTGVLESQMDDSGHRENGRHKADQYKSAQGGPWMMQHQPSMKQIMTIMAERDAALQERNLALSEKKAALAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSLTNNMSCPPGCQIARGVKHIHHPQQQQHTHVPHMNESNYNSREMHPSNDACPVSPVASESTKARQNKRPKEGKTVTTPNKKVSKGPRKVKREAEDLNKVMLGKSQEWKDGIGIMSGGDDLNKQLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTISMYPLPAVPNKRHARLGGRKMSGSAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26934633 26942497 - CrPI670011_08g013930.1 Cre08g1393 506311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1393 556 PANTHER - 240 556 IPR010409 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009723(PANTHER)|GO:0043565(PANTHER)
Cre08g1393 556 Coils Coil 276 303 - -
Cre08g1393 556 Pfam GAGA binding protein-like family 218 556 IPR010409 -
Cre08g1393 556 SMART GAGA_bind_2 218 556 IPR010409 -
Cre08g1393 556 MobiDBLite consensus disorder prediction 342 377 - -
Cre08g1393 556 MobiDBLite consensus disorder prediction 335 405 - -
Cre08g1393 556 MobiDBLite consensus disorder prediction 378 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1393 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1849 Cre-Chr9:36915193 Cre08g1393 Cre-Chr8:26934633 1.10E-35 transposed
Cre02g0816 Cre-Chr2:4957734 Cre08g1393 Cre-Chr8:26934633 3.40E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1061 . . . . . . . . . . . . . . . . . Bhi04g00240 . . . Hepe10g0135 . . Cla08g01437 Cam08g1917 Cec08g1493 . . . Cre08g1393 Cone4ag1956 Cone7ag1869 . . . . . Cme03g01896 . Blo18g00782 . . . . Bma01g00731 . . . . Cma12g00420 . . Car15g00648 . . . . . . . . . . . . . . . . Lsi08g01338 . Chy03g01399 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g1849 . 339 618 BBR/BPC Transcription factor family AT2G01930 57.4 5.5e-86 314.7
Cre08g1393 . 442 556 BBR/BPC Transcription factor family AT2G35550 60.0 1.5e-38 156.8
Cre02g0816 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.9e-37 152.5
Cre09g1849 . 339 618 BBR/BPC Transcription factor family AT1G68120 50.5 4.3e-72 268.5
Cre08g1393 . 450 556 BBR/BPC Transcription factor family AT1G68120 57.0 3.4e-37 152.5
Cre02g0816 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.2 7.0e-84 307.8
Cre08g1393 . 218 556 BBR/BPC Transcription factor family AT2G21240 51.1 2.7e-59 226.1
Cre02g0816 . 1 313 BBR/BPC Transcription factor family AT4G38910 59.7 1.9e-70 263.1
Cre08g1393 . 218 556 BBR/BPC Transcription factor family AT4G38910 50.3 3.5e-56 215.7
Cre08g1393 . 306 556 BBR/BPC Transcription factor family AT5G42520 59.3 3.1e-81 298.9
Cre08g1393 . 442 556 BBR/BPC Transcription factor family AT2G35550 60.0 1.5e-38 156.8
Cre02g0816 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.9e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54220 PF06217 GAGA_bind 1.20E-105 No_clan Cre TF