Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1396 ATGAAGGGTGGAGGGTTAAATATGGCATTTAATAATGCCTGTGAATGGTACAAAGAAGAAAGACTAGAACCACGTCGTTCTGAAGTGGTTGTTCTGCTGCATCAGCTACTAAAATGGTTGACATTGACAGTAGCATTTAGGCCATGCTCGCACGCCCGTGAGACTTTTTCCCCCATCCCGCTGGCGGCGCACTTCTCAGAGCCGACCGTCACTCTCATCACCGGTGAGGCTAACGTGCGCACCTCACTCTCTTCTTCTTCCTCTCACCAATTCTTGAATGCCGCCATAGACGAGCTTCTTCAAGTTAGGAAGGAACTGTTTCTGATATTCGCGGGTATTTTTGGATTAGCTTCGAATTTTGTGGAGCACGGCCGAGAATGGTTGTGGAGTTACATTCCGCACGGGGGTTACACCATCCAGATTTGCTGGCTATTTATTGAATGTGGGGTTGGGAAGATGGATGGAGACAATAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCAAAGGATGGTGGGTTTGACTCAGATGATGATGAGCCCATTGGCTCTCTGCTGAAATTGAAGAGATCACGAAACTCTAAAAAGACTAAGTTGGGTGTAGATGATGGCGGTGAAAGGGACAACATAGTTGACAAGAAAGGAGCAAAATTGCCAGTGCAAGAGGACTTTGGGGGAATGGATGATACTTTAGCTAGTTTCAGAAAGAAGTTGAGGCGTCCTAAAAAGGTTAGTGGACCCGAAATTGCTAGGGAACGGAGTTCTGCTCTAAGTGTGACAGAATCTTTAGATCCATTATCTAATACGTCCAGAGGACAAGGGGATTTAGACACAAGATTGAGACCAGAAAATTGTGAATTAATGGATCGTGAAGAGTCTGATCCATCTGCAAAGATTGACGTAGAAACAAGGTGTGAAGCACCTGATTTGGAATTAAAAGACATGGAGATGGGTATCCCGAGTAGGAGAAGTGCTAATTGCTCTTTCGATAAACAGTTGGATGATTCATTGTCTGCATTTGTCCAAAAGGTTCAGTCTGGTTCAACTAGGAAATCATTGGTATCTACAACATTTAAACCAGACTGCAAGGATGAGGCTTCCGAAAATAAATTGAGTCCTTTTTCTAGAGCTGTTTCTGGGGATCATGAAACACACTCCATTGTGAGTTTTAATTCTTCGGCTAAGCTGGCACAAGTTGTCAAAAAAACAGATTCTGAACTTAATACATCATATTTAATTTCCTGTTCGCATTACACCAAAGAGAATTGTAATCGTGGTCGAGGACAATGCCATCTAGGGGTTGAATGTGACCAAGAAGAGTATCAATGCCGTCTTAATAATCACAAGAATCCTGACATGAGACCATGCATATCAAATGAAGTTGATGATGAAGACAGCAAAAACTTTACTCAATTGAGGGACAATTTCCGGGCACTGGAAAGAAAGGCATCCTGTGAAATCAAGAATGTACTAAAACATTGTTCTTGTGGCAATACAATGGTGGATAGCCATTTGGCAGTAATGGGTTCTTTTCAGGATGGGCTAGGTGAAAATCAACTTAATGAAAGTATGTGCAGTTCTTGTCGTCCTCTAGAACAGGTAAATGAAAACCATGGCCTTTGTGGGGGTGTTTCCAGCGGAGATTTTTGTGATGTGGTGGCCCAAGAGACCACAGTCACTTTGTCTAAAATAACCCCAGGTGTAGATTGCGAAGGAAAAGAAAGATCACTTGTTATACATCACGATGAATTGCCGAACTCTACCACTTTCTGTGAAAGTTCTTCCAAAGAAATCCTTAGATCTACTAAAGATTTGAAGGTTTCTGATCAATCATTAGGCAGAACAACACTCTCCAATCTTCAGTTATCTGCAGGTTTCGATTCATCGAAAGTGGATAAAACTTGCAGCGACTCTGATAATTTAAATACTGGAACTGATGAGCCGAATAATGAAGGTGGTTCTGTGCAAAAGGAAAATGCTCTGATCTCTAGGATTTCAGATGCAACTGCTGTTCAATCTCACAGATCCCAAAAATCTGGGGCAACTGCTTCTGGACCAAATTATCCAGAGGTTTGTCCTAGTGGAAATTTCAGCATGATATCAGATAGTCAACCGGCCAAGGCTTCGGTGGAGATAGATGGTCCAAATAATATACTTACTGGTAAAGAGGTTAAGGTATCTTCTCTTGGGTCTTTCACTCCAGATGATAATGACCTTGAGGATGTAATATCTGCTCCTGGTAGTGAAAAAGATTTAAAGCTTTCAGCTTTACAACGTGTAGCACGCAAGACAAAGAAGCCTAGACATGATGACATGGCTTATGAAGGAGATATTGATTGGGAGGTTTTGATTAGTGAGCGTGCAGTTGATGGCGACCATTCTTTCAGATCAAGAAAGGATTCTACATCAACGACTTTTACAGAGGCTGAAACTGGTGGTAGAGCTGCAGTGTCTGCAGGGCTTAAGGCACATGCAGTTGGTCTACTTGAGAAGATTAAATTTAAGGATGTGCTAAAGCGCAAAGGTGGGCTTCAAGAGTACATAGCATGCAGGAATCAGATCCTGGGCCTTTGGTGTAAAGATGTTACACGCATTTTGCATCTCGTTGACTGTGGGGTCACTGATACTCCCTCTATGGATGAACCACCACGTTTTCCCCTTATTAGGGAGATCTATGCATTTCTTAATCTACGTGGTTATATAAATGCGGGGATTGCTTCTGAGAAAGCCAAATCAGAATCTGACATTAAATATGATCATGAACTGGGAGAGAAGAAGGTTGGAGACGTTAGTTTTGCTTCAGCTGCTGGTTCTGAAGAAGGGGTTTCTGTCATGGTAAAAAATTCTGATGCTTCTAATGCAGAGAACGATGTTTCAGCTGGCTGTGAAGTAATATTGGAAGATGCTGAAGGAAGAGACCCCGTGATTGTAAATAATTTGGATTTACCAAAATCAGTGGAACATGAACAAGAATTGGTACATGACTTGGAGTTTGGTACTCCTGATTCTATACCGGTAAAATTGGTTGGTGATGTTTCAGGTAAAGCTGCCTCGCATTTAACTAATCATTCAAGAAATGGTTGGCACCCAATCCACTCCTCTGATGAGTGTGTAGGAGGTGATCAACAACAGCAGAGTAATTCTGATGTCAGAAAGAAAGTAATTGTTATTGGAGCTGGTCCTGCTGGCTTAACTGCTGCAAAGCACTTGCATCGTCAGGGCTTTGCTGTCACCATACTTGAAGCCAGGAATAGGTTAGGAGGTCGTGTTCATACAGATCGCTCCTCTCTTTCTGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTCGCAAGCGAAAGAAGACCCGATCCTTCCTCATTGATTTGCACTCAATTGGGCCTTGAGTTGACTGTATTAAATAGTGACTGTCCCCTCTATGACATCATTACATGCAAAAAAGTTCCAGTAGACATGGACGAGGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAGAGGGGAGCATGCAATGGCCATGTCTCTCGAGGAGGGTTTAGAATATGCCCTTAAGCGACGACGCATGGCTCGAGGTATGGATGTTTGTTCTGAGGAAGAGGTTTTGAGTCCCTTTGAGAGGAGAGTTATGAATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTATGCTCAAGAAAGTATCTCTTCCTAATTGGAATCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATTAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTCGATGTTCACCTAAATCATGTTGTGGCTGATATTTCTTACAGCACCGATGACACTGGGTTTAATGGGAATCAGTGTGCAAAGGTAAAAGTTTCCACAACCAATGGTTGCATGTTTCTAGGAGATGCTGTCCTTATTACTGTGCCTCTTGGGTGCTTGAAAGCAGAAACTATTAAATTTTCTCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGGTTTGGAGTTCTTAACAAAATAGTTCTTGAATTTCCAGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCAGTTCTCATAGCACTAGTGGTTGGTCAGGCTGCTGTGGAGAGGCAATTTATGAGCTCTTCCGATAATGTAAGCCATGCATTAATGGTCCTTCGGAAACTTTTTGGAGAAGCTATGGTACCTGATCCAGTTGCATCTGTTGTAACTGATTGGGGAAGAGATCCGTTTAGCTATGGTGCTTACTCGTATGTTGCTGTTGGAGCGTCTGGAGAGGACTATGACATTTTAGCAAGACCTGTTGGAAACTGTTTGTTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGGCTAAGAGAGGCTGTACGCATGATTGATGTACTGAGTGATGGTTATGATTTCACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAAAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACATAATTACAAGACTCGATGCTGTTAAGCTCTCTGATGCTCTTTACAAAAATTCTTTGGATGGTGCGATTCTGACCACAGAAGCTTTACTACAAGATTTGTTTTTTAGTGCAAAAACCACAGCAGGGAGATTGCAAGTGGCAAAAGAATTGCTGAATCTCCCTGCTGAGACGTTGAAGTCCTTTGCAGGGACCAAAGAAGGTCTTACAGTTCTCAACTCATGGATTTTGGACTCGATGGGGAAGGATGGGACTCAACTTCTTCGGCAATGTGTTCGTATTCTTGTGTTAGTTTCAACAGATCTACTTGCAGTTCGCTTATCAGGCATAGGCAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATCCGTGCTATTGCAAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAGGCTGCTAATGGGGGTTTAAAACTCTCTAAGTCAGTTTCTGCTGTAGAACTATTGAAGAGGAAATCTAATAAAGATTCTTCTTCTGGGAAACCTCCTTTGCATGCATACAACAGCACACTGGATAGTAGGGGCAATTTGCTGACTTCTGCATCTGCTGCAATTCCCTTGCAGTCTGATGTCAATATGAAAAATGATAATAGCAAACAATTGAAATTAGAAATGGAAAATTCATCAAAGTCAGATATCAGTTCATCGAGGTCAAGGGGCTCATTCGGAAAGCAGGATGCAGAGATGGAAGACAACAACATTGCTATGACAGAAGAAGAGCAGGCTGCCTTTGCTGCTGCTGAGGCAGCACGTGCAGCCGCACTTGCAGCTGCGAAGGCATATGCATCTTCTGAAGCCAAGAGTGCGATGCAGCTCCCAAAAATCCCCTCCTTTCACAAATTTGCTAGACGGGAGCATTATGCTCAAATGGATGAGTGTGAGTATAAAAAGAAATTGTCTGGCAGTGTGCTTGGAAGACAAGATTGTATATCCGAAATAGATTCAAGAAACTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGAATGTCTGCAGATAACCTTTCACAAAGAAGCCATTCGAATGAGATTGTTAGCCAATTAAACTTCAGGGAGCACTCTGGTGAAAGTGCTCCTGTGGATAGTAGTATATACACAAAAGCATGGGTTGATACAGCTGGTAGTGTTGGAATGAAAGATTATCATGCTATTGAGAGATGGCGCACTCAAGCAGCTGCAGCTCATGTAAATGATGAGGAGGATTCAAACACAAATTGGCATAAACCCACATGGAATAGTGATCAAGTAGCGAATGAGAGCTCAATATCACAAGTGACAATCAACAAGGAGCCCATAAGAAACAATCATCGTGGGGCTGACAGAATTAAGCAGGCTGTTGTTGATTATGTTGCTTCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATCGACAAGGATGGATACAAGTCAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCCACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGCTAGATGAGTCTACTGCTTGTGCGACTTGGAACACAACAAATGCAATATACGTACCGAGGCATCTTCGTATTCTAGTTCTAATTGTTGATGCAACAGCCTTGTTGCGAAGTTGTTTCCTAGAAGGTTCTATTAGTTGCTCTTCATTATTCTCCATTGAATTCAATAGCTCATCTGATGGAAAAGTTCTTGTGGGTGCTGCACCCCATGTAAAATGA 6423 42.61 MKGGGLNMAFNNACEWYKEERLEPRRSEVVVLLHQLLKWLTLTVAFRPCSHARETFSPIPLAAHFSEPTVTLITGEANVRTSLSSSSSHQFLNAAIDELLQVRKELFLIFAGIFGLASNFVEHGREWLWSYIPHGGYTIQICWLFIECGVGKMDGDNKKSGFRKRTKPKDGGFDSDDDEPIGSLLKLKRSRNSKKTKLGVDDGGERDNIVDKKGAKLPVQEDFGGMDDTLASFRKKLRRPKKVSGPEIARERSSALSVTESLDPLSNTSRGQGDLDTRLRPENCELMDREESDPSAKIDVETRCEAPDLELKDMEMGIPSRRSANCSFDKQLDDSLSAFVQKVQSGSTRKSLVSTTFKPDCKDEASENKLSPFSRAVSGDHETHSIVSFNSSAKLAQVVKKTDSELNTSYLISCSHYTKENCNRGRGQCHLGVECDQEEYQCRLNNHKNPDMRPCISNEVDDEDSKNFTQLRDNFRALERKASCEIKNVLKHCSCGNTMVDSHLAVMGSFQDGLGENQLNESMCSSCRPLEQVNENHGLCGGVSSGDFCDVVAQETTVTLSKITPGVDCEGKERSLVIHHDELPNSTTFCESSSKEILRSTKDLKVSDQSLGRTTLSNLQLSAGFDSSKVDKTCSDSDNLNTGTDEPNNEGGSVQKENALISRISDATAVQSHRSQKSGATASGPNYPEVCPSGNFSMISDSQPAKASVEIDGPNNILTGKEVKVSSLGSFTPDDNDLEDVISAPGSEKDLKLSALQRVARKTKKPRHDDMAYEGDIDWEVLISERAVDGDHSFRSRKDSTSTTFTEAETGGRAAVSAGLKAHAVGLLEKIKFKDVLKRKGGLQEYIACRNQILGLWCKDVTRILHLVDCGVTDTPSMDEPPRFPLIREIYAFLNLRGYINAGIASEKAKSESDIKYDHELGEKKVGDVSFASAAGSEEGVSVMVKNSDASNAENDVSAGCEVILEDAEGRDPVIVNNLDLPKSVEHEQELVHDLEFGTPDSIPVKLVGDVSGKAASHLTNHSRNGWHPIHSSDECVGGDQQQQSNSDVRKKVIVIGAGPAGLTAAKHLHRQGFAVTILEARNRLGGRVHTDRSSLSVPVDLGASIITGVEADVASERRPDPSSLICTQLGLELTVLNSDCPLYDIITCKKVPVDMDEALEAEYNSLLDDMVLLVAQRGEHAMAMSLEEGLEYALKRRRMARGMDVCSEEEVLSPFERRVMNWHFANLEYGCAAMLKKVSLPNWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLDVHLNHVVADISYSTDDTGFNGNQCAKVKVSTTNGCMFLGDAVLITVPLGCLKAETIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQFMSSSDNVSHALMVLRKLFGEAMVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDVLSDGYDFTAEVEAMEAAQRQSECENDEVGDIITRLDAVKLSDALYKNSLDGAILTTEALLQDLFFSAKTTAGRLQVAKELLNLPAETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAANGGLKLSKSVSAVELLKRKSNKDSSSGKPPLHAYNSTLDSRGNLLTSASAAIPLQSDVNMKNDNSKQLKLEMENSSKSDISSSRSRGSFGKQDAEMEDNNIAMTEEEQAAFAAAEAARAAALAAAKAYASSEAKSAMQLPKIPSFHKFARREHYAQMDECEYKKKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRTQAAAAHVNDEEDSNTNWHKPTWNSDQVANESSISQVTINKEPIRNNHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKLDESTACATWNTTNAIYVPRHLRILVLIVDATALLRSCFLEGSISCSSLFSIEFNSSSDGKVLVGAAPHVK 2140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26956874 26970407 + CrPI670011_08g013960.1 Cre08g1396 506314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1396 2140 MobiDBLite consensus disorder prediction 254 274 - -
Cre08g1396 2140 Pfam Flavin containing amine oxidoreductase 1061 1512 IPR002937 GO:0016491(InterPro)
Cre08g1396 2140 ProSiteProfiles SWIRM domain profile. 811 911 IPR007526 GO:0005515(InterPro)
Cre08g1396 2140 SUPERFAMILY FAD-linked reductases, C-terminal domain 1350 1461 - -
Cre08g1396 2140 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1608 1693 IPR035441 -
Cre08g1396 2140 MobiDBLite consensus disorder prediction 238 277 - -
Cre08g1396 2140 PANTHER FLAVIN MONOAMINE OXIDASE 1041 1514 IPR050281 GO:0016491(PANTHER)
Cre08g1396 2140 MobiDBLite consensus disorder prediction 157 178 - -
Cre08g1396 2140 SUPERFAMILY FAD/NAD(P)-binding domain 1050 1514 IPR036188 -
Cre08g1396 2140 Gene3D - 1140 1467 - -
Cre08g1396 2140 Gene3D - 1053 1510 IPR036188 -
Cre08g1396 2140 MobiDBLite consensus disorder prediction 628 654 - -
Cre08g1396 2140 MobiDBLite consensus disorder prediction 667 699 - -
Cre08g1396 2140 Pfam SWIRM domain 828 901 IPR007526 GO:0005515(InterPro)
Cre08g1396 2140 Gene3D - 811 914 IPR036388 -
Cre08g1396 2140 MobiDBLite consensus disorder prediction 1764 1779 - -
Cre08g1396 2140 MobiDBLite consensus disorder prediction 1762 1783 - -
Cre08g1396 2140 SUPERFAMILY Homeodomain-like 813 907 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1396 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1396 Cre-Chr8:26956874 Cre11g2239 Cre-Chr11:34160992 2.10E-84 dispersed
Cre08g1396 Cre-Chr8:26956874 Cre07g1446 Cre-Chr7:29545401 6.40E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1051 . Blo12g00895 Bda01g00502 . . Bpe04g00232 Bma04g00227 Bma01g02351 . . . . . . . . . Bhi04g00234 . . . . . . Cla08g01440 Cam08g1920 Cec08g1496 . Clacu08g1610 . Cre08g1396 . . . . . . . Cme03g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54221 PF01593 Amino_oxidase 1.60E-98 CL0063 Cre TR