Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1397 ATGTCGTCAACTTTCAGCGGCGATGAAACGGCACCCTTCTTCGGCTTCCTCGGCGCCGCTGCAGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGGACGGCGAAGAGCGGGGTGGGAGTTGCGTCTATGGGAGTAATGAGGCCTGAACTGGTGATGAAGTCAATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTAATTATTAGTACAGGAATTAACCCGAAGGCCAAATCTTATTACCTCTTCGATGGTTACGCACATCTCTCCTCTGGCCTTGCTTGTGGCCTTGCCGGTCTGTCCGCTGGCATGGCTATCGGGATCGTCGGTGATGCTGGTGTTAGAGCCAATGCGCAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTTTAATTTTTGCTGAAGCTTTGGCACTCTATGGACTCATTGTTGGCATTATTCTCTCTTCCCGAGCTGGTCAGTCAAGAGCTGATTAA 498 49.8 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26971266 26972577 + CrPI670011_08g013970.1 Cre08g1397 506315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1397 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cre08g1397 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cre08g1397 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cre08g1397 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
Cre08g1397 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cre08g1397 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cre08g1397 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre08g1397 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre08g1397 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre08g1397 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre08g1397 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cre08g1397 165 Gene3D - 11 162 IPR035921 -
Cre08g1397 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 159 - GO:0016021(PANTHER)
Cre08g1397 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1397 Cre-Chr8:26971266 Cre11g1987 Cre-Chr11:31615871 3.30E-75 dispersed
Cre08g1397 Cre-Chr8:26971266 Cre08g1398 Cre-Chr8:26975093 1.50E-75 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1397 K02155 - mdm:114824771 287.73