Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre08g1397 | ATGTCGTCAACTTTCAGCGGCGATGAAACGGCACCCTTCTTCGGCTTCCTCGGCGCCGCTGCAGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGGACGGCGAAGAGCGGGGTGGGAGTTGCGTCTATGGGAGTAATGAGGCCTGAACTGGTGATGAAGTCAATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTAATTATTAGTACAGGAATTAACCCGAAGGCCAAATCTTATTACCTCTTCGATGGTTACGCACATCTCTCCTCTGGCCTTGCTTGTGGCCTTGCCGGTCTGTCCGCTGGCATGGCTATCGGGATCGTCGGTGATGCTGGTGTTAGAGCCAATGCGCAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTTTAATTTTTGCTGAAGCTTTGGCACTCTATGGACTCATTGTTGGCATTATTCTCTCTTCCCGAGCTGGTCAGTCAAGAGCTGATTAA | 498 | 49.8 | MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 26971266 | 26972577 | + | CrPI670011_08g013970.1 | Cre08g1397 | 506315 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre08g1397 | 165 | Pfam | ATP synthase subunit C | 17 | 76 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
| Cre08g1397 | 165 | Pfam | ATP synthase subunit C | 97 | 155 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
| Cre08g1397 | 165 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 89 | 156 | - | - | |
| Cre08g1397 | 165 | FunFam | V-type proton ATPase proteolipid subunit | 11 | 162 | - | - | |
| Cre08g1397 | 165 | SUPERFAMILY | F1F0 ATP synthase subunit C | 13 | 77 | IPR035921 | - | |
| Cre08g1397 | 165 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 13 | 80 | - | - | |
| Cre08g1397 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 134 | 157 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cre08g1397 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 107 | 133 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cre08g1397 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 56 | 80 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cre08g1397 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 30 | 54 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cre08g1397 | 165 | SUPERFAMILY | F1F0 ATP synthase subunit C | 87 | 156 | IPR035921 | - | |
| Cre08g1397 | 165 | Gene3D | - | 11 | 162 | IPR035921 | - | |
| Cre08g1397 | 165 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 3 | 159 | - | GO:0016021(PANTHER) | |
| Cre08g1397 | 165 | NCBIfam | V-type ATPase subunit C | 13 | 121 | IPR011555 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre08g1397 | K02155 | - | - | mdm:114824771 | 287.73 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre08g1397 | Cre-Chr8:26971266 | Cre11g1987 | Cre-Chr11:31615871 | 3.30E-75 | dispersed | |
| Cre08g1397 | Cre-Chr8:26971266 | Cre08g1398 | Cre-Chr8:26975093 | 1.50E-75 | tandem |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cre08g1606 | . | 1 | 831 | Primary Pumps ATPases(2) | AT1G10130 | 84.1 | 0.0e+00 | 1374.4 | |
| Cre02g2386 | . | 1 | 840 | Primary Pumps ATPases(2) | AT2G28520 | 79.0 | 0.0e+00 | 1328.9 | |
| Cre02g0838 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.3e-292 | 1002.7 | |
| Cre08g1408 | . | 1 | 774 | Primary Pumps ATPases(2) | AT2G28520 | 61.2 | 1.1e-285 | 979.5 | |
| Cre02g0838 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1233.0 | |
| Cre08g1408 | . | 1 | 779 | Primary Pumps ATPases(2) | AT2G21410 | 71.3 | 0.0e+00 | 1147.1 | |
| Cre02g2386 | . | 9 | 844 | Primary Pumps ATPases(2) | AT2G21410 | 60.7 | 1.8e-294 | 1008.8 | |
| Cre02g0838 | . | 1 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.4 | 0.0e+00 | 1235.3 | |
| Cre08g1408 | . | 1 | 779 | Primary Pumps ATPases(2) | AT4G39080 | 72.1 | 0.0e+00 | 1151.3 | |
| Cre02g2386 | . | 9 | 844 | Primary Pumps ATPases(2) | AT4G39080 | 61.6 | 2.0e-293 | 1005.4 | |
| Cre08g1397 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cre08g1398 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cre11g1987 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cre08g1397 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.5e-66 | 249.6 | |
| Cre08g1398 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.5e-66 | 249.6 | |
| Cre11g1987 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.4e-66 | 248.4 | |
| Cre08g1397 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.8e-74 | 274.2 | |
| Cre08g1398 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.8e-74 | 274.2 | |
| Cre11g1987 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.8e-74 | 274.2 | |
| Cre11g1987 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.9e-53 | 203.8 | |
| Cre08g1397 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.3e-52 | 202.6 | |
| Cre08g1398 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.3e-52 | 202.6 | |
| Cre05g1876 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 82.5 | 2.0e-70 | 262.7 | |
| Cre08g1242 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.4e-70 | 261.9 | |
| Cre08g1397 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.3e-60 | 227.6 | |
| Cre08g1398 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.3e-60 | 227.6 | |
| Cre11g1987 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.3e-60 | 227.6 | |
| Cre05g1876 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 5.2e-73 | 271.2 | |
| Cre08g1242 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.7e-71 | 266.2 | |
| Cre03g0492 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1671.4 | |
| Cre03g0492 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.0 | |
| Cre08g1606 | . | 1 | 831 | Primary Pumps ATPases(2) | AT1G10130 | 84.1 | 0.0e+00 | 1374.4 | |
| Cre03g0492 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1319.7 | |
| Cre03g2001 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 4.1e-57 | 217.6 | |
| Cre02g0748 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 3.7e-268 | 920.6 | |
| Cre10g2148 | . | 33 | 140 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 4.1e-37 | 151.0 | |
| Cre09g1721 | . | 237 | 612 | Primary Pumps ATPases(2) | AT1G12840 | 83.5 | 1.2e-181 | 632.9 | |
| Cre01g0259 | . | 1010 | 1227 | Primary Pumps ATPases(2) | AT3G58730 | 86.7 | 2.0e-103 | 372.5 | |
| Cre10g1759 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.4 | 2.2e-206 | 715.3 | |
| Cre08g1397 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.8e-74 | 274.2 | |
| Cre08g1398 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.8e-74 | 274.2 | |
| Cre11g1987 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.8e-74 | 274.2 | |
| Cre02g0748 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.4e-270 | 927.9 | |
| Cre05g1625 | . | 1 | 184 | Primary Pumps ATPases(2) | AT1G64200 | 73.8 | 5.6e-66 | 247.7 | |
| Cre02g0748 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 7.8e-266 | 912.9 | |
| Cre02g2386 | . | 1 | 840 | Primary Pumps ATPases(2) | AT2G28520 | 79.0 | 0.0e+00 | 1328.9 | |
| Cre02g0838 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.3e-292 | 1002.7 | |
| Cre08g1408 | . | 1 | 774 | Primary Pumps ATPases(2) | AT2G28520 | 61.2 | 1.1e-285 | 979.5 | |
| Cre10g1627 | . | 63 | 404 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 3.0e-187 | 651.4 | |
| Cre05g1625 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.4 | 7.9e-91 | 330.5 | |
| Cre09g0154 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1171.4 | |
| Cre02g0748 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 3.7e-268 | 920.6 | |
| Cre02g0748 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.4e-270 | 927.9 | |
| Cre02g0748 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 7.8e-266 | 912.9 | |
| Cre09g1721 | . | 237 | 612 | Primary Pumps ATPases(2) | AT1G12840 | 83.5 | 1.2e-181 | 632.9 | |
| Cre01g0259 | . | 1010 | 1227 | Primary Pumps ATPases(2) | AT3G58730 | 86.7 | 2.0e-103 | 372.5 | |
| Cre05g1625 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.4 | 7.9e-91 | 330.5 | |
| Cre05g1625 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 69.0 | 3.3e-76 | 282.0 | |
| Cre05g1625 | . | 1 | 184 | Primary Pumps ATPases(2) | AT1G64200 | 73.8 | 5.6e-66 | 247.7 | |
| Cre03g2001 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 4.1e-57 | 217.6 | |
| Cre10g2148 | . | 33 | 140 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 4.1e-37 | 151.0 | |
| Cre10g1759 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.4 | 2.2e-206 | 715.3 | |
| Cre02g2386 | . | 1 | 840 | Primary Pumps ATPases(2) | AT2G28520 | 79.0 | 0.0e+00 | 1328.9 | |
| Cre02g0838 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.3e-292 | 1002.7 | |
| Cre08g1408 | . | 1 | 774 | Primary Pumps ATPases(2) | AT2G28520 | 61.2 | 1.1e-285 | 979.5 | |
| Cre02g0838 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1233.0 | |
| Cre08g1408 | . | 1 | 779 | Primary Pumps ATPases(2) | AT2G21410 | 71.3 | 0.0e+00 | 1147.1 | |
| Cre02g2386 | . | 9 | 844 | Primary Pumps ATPases(2) | AT2G21410 | 60.7 | 1.8e-294 | 1008.8 | |
| Cre02g0838 | . | 1 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.4 | 0.0e+00 | 1235.3 | |
| Cre08g1408 | . | 1 | 779 | Primary Pumps ATPases(2) | AT4G39080 | 72.1 | 0.0e+00 | 1151.3 | |
| Cre02g2386 | . | 9 | 844 | Primary Pumps ATPases(2) | AT4G39080 | 61.6 | 2.0e-293 | 1005.4 | |
| Cre08g1397 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cre08g1398 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cre11g1987 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.5e-60 | 229.2 | |
| Cre11g1987 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.9e-53 | 203.8 | |
| Cre08g1397 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.3e-52 | 202.6 | |
| Cre08g1398 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.3e-52 | 202.6 | |
| Cre08g1397 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.3e-60 | 227.6 | |
| Cre08g1398 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.3e-60 | 227.6 | |
| Cre11g1987 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.3e-60 | 227.6 | |
| Cre08g1397 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.5e-66 | 249.6 | |
| Cre08g1398 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.5e-66 | 249.6 | |
| Cre11g1987 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.4e-66 | 248.4 | |
| Cre08g1397 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.8e-74 | 274.2 | |
| Cre08g1398 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.8e-74 | 274.2 | |
| Cre11g1987 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.8e-74 | 274.2 | |
| Cre05g1876 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 5.2e-73 | 271.2 | |
| Cre08g1242 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.7e-71 | 266.2 | |
| Cre05g1876 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 82.5 | 2.0e-70 | 262.7 | |
| Cre08g1242 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.4e-70 | 261.9 | |
| Cre10g1627 | . | 63 | 404 | Primary Pumps ATPases(2) | AT3G28710 | 95.0 | 2.6e-194 | 674.9 | |
| Cre10g1627 | . | 63 | 404 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 3.0e-187 | 651.4 | |
| Cre03g0492 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1671.4 | |
| Cre03g0492 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1319.7 | |
| Cre08g1606 | . | 1 | 831 | Primary Pumps ATPases(2) | AT1G10130 | 84.1 | 0.0e+00 | 1374.4 | |
| Cre03g0492 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.0 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000593 | 4 | 3 | 2 | 4 | 4 | 2 | 6 | 2 | 1 | 3 | 2 | 3 | 4 | 3 | 3 | 5 | 3 | 7 | 5 | 3 | 3 | 4 | 3 | 3 | 2 | 3 | 3 | 6 | 3 | 3 | 102 |