Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1403 ATGAGAAATGTCTTGGACATCCGCCTGGTGGCAAACCGGTATGCCGCAAAATTGCAACTCTGTTCCCCACAGGACCCGGCTTCATTCTCACTTGCTCGGGCTGTCCATGGCCATATGATTGCTTCCGGATTCAAGCCTCGTGGGCATTTCCTTAATCGTTTGCTGGAAATCTACTGTAAATCGTCGAATCTTGTGTATGCACGCCAGCTGTTCGACGAAATTCCCAACCCAGATGCTATAGCAAGGACTACGTTGATTTCGGCTTATTCTGGTTTGGCAAATCTGGAACTGGGTCGAGAAATATTTAATGGAACTCCATTGCATCTGAGGGATACTGTTTTCTACAATGCAATGATCACTGGTTATTCGCACAACGGTGATGGTCATTCTGCTCTTGAGCTGTTTCGTGCTATGCGACGAGATGACTTCCGGGCTGATGACTTTACATTTACAAGCGTTCTCAGTGCTTTAGTGCTCGTTGTTGACAATGAGCAGCAGTGTGGTCAGATGCATTGTGCAGTAGTGAAAACGGGAATGGAGTGTGTTTCTTCTGCAGTGTTGAACGCTCTTCTGTCTGTTTATGTCAAGTGTGCATCACCGTTAGGGATATCATCTTCAGCAATGGTTTCGGCTAGGAAATTGTTTGACGAAATGCCTAAGAAGGATGAGTTAACGTGGACGACGATGATTACTGGGTATGTGAGGAATGATGATCTGAATGGGGCACGTGAAGTTTTTGATGCAATGACTGAAAAGCTTGGGGCAGCATGGAATGCCATGATATCTGGATATGTGCACTGTGGTTGTTTTCAGGAAGCATTGATAATGTGTAGGAAAATGCGTTTACTCGGAATTCAGTACGATGATGTCACCTATACGACCATAATCAGTGCTTGTGCCAATGGTGGATTCTTTGAAATGGGGAAACAGGTGCATGCTTACATTCTAAAAAATGAGCTGAACCCAAATCATAACTTTTTGCTGTCTGTCAGTAATTCACTGATTACTTTGTATTGTAAAAATGATGAAGTCGATGAGGCACGGAAGATGTTTTATGAGATGCCAGTTAGAAATATTATTACTTGGAATGCAATCTTATCAGGGTATGTGAATGCTGGGCGTATGGAGGAAGCAAAGTCTTTCTTCGAAGAAATGCCAGAGAAAAACCTTCTTACATTGACTGTGATGATTTCAGGATTGGCACAAAATGGATTTGGAGATGAGGGTTTGAAGTTGTTCAAGCAAATGAGGTTGGATGGTTTTGAACCTTGTGATTATGCATTTGCAGGAGCACTTACAGCTTGTTCTGTGCTTGGAGCATTGGAGAATGGTCGCCAGCTCCATGCTCAACTTGTTCACCTGGGCTACGAGTCAAGCCTTTCTGTTGGCAATGCAATGATCTCAATGTATGCAAGATGTGGAGTGGTTGAGGCTGCAGAATCTGTGTTTGTCACTATGCCTTCTGTAGACTTGGTTTCATGGAATGCAATGATTGCAGCACTGGGACAACATGGGCATGGTGTAAAAGCAATTGAACTTTTTGATCAAATGTTGAAAGAGGGTGTATTCCCTGATAGAATAACATATCTGGCCGTTCTCACTGCATGTAGCCATGCAGGGTTGGTTGCGGAGGGACGCCATTATTTTAATTCAATGTTGGAAAGTTATGGTATCACCCCTGGTGAAGATCATTATGCTCGAATGGTTGATTTGTTTTGTCGAGCCGGAATGTTCTCATATGCAAGGAATGTCATTGACACTATGCCTTCTAAACCTGGTGTGCCAGTTTGGGAGGCTCTTCTTGCCGGTTGCCGGATTCATGGGAACATGGATTTGGGAATAGAAGCTGCTGAACAACTTTTTGACCTAATGCCACAACACGATGGAGCCTATGTACTTTTGTCGAACATGTATGCTGATGTAGGTCGGTGGAATGATGTTGCTAAGGTGCGGAAATTGATGAGGGACCATGCGGTCCAAAAGGAGCCTGCTTGTAGTTGGATTGAGGTTGAGAATAAGGTTCATGTGTTCATGGTCGATGATGATGTGCACCCTGAGGTGCTATCCATCTACCGTTACTTGGAGCAGGTAGGCCTTGAAATGAAGATATTAGGATATATCCCAGACACTAAATTTGTGTTGCATGATATGGAATATGAACAAAAGGAACATGCCTTGTCTACTCACAGTGAGAAGCTCGCTGTCGGGTTTGGAATTATGAAGCTTCCTCCAGGTGCAACAGTCAGGGTTTTCAAGAACCTCAGGATCTGTGGGGATTGCCATAATGCATTCAAGTTCATGTCTAAAGTGGCAAGTAGGGAGATTATAGTGAGGGATAGAAAGAGGAGATCATCTGTAAAACTGGGCACCAAGTCGGTGGATTTGCAAGGGGAGTTGAATGAATTAAAGGAAAGATGGAACCGCTGA 2427 43.92 MRNVLDIRLVANRYAAKLQLCSPQDPASFSLARAVHGHMIASGFKPRGHFLNRLLEIYCKSSNLVYARQLFDEIPNPDAIARTTLISAYSGLANLELGREIFNGTPLHLRDTVFYNAMITGYSHNGDGHSALELFRAMRRDDFRADDFTFTSVLSALVLVVDNEQQCGQMHCAVVKTGMECVSSAVLNALLSVYVKCASPLGISSSAMVSARKLFDEMPKKDELTWTTMITGYVRNDDLNGAREVFDAMTEKLGAAWNAMISGYVHCGCFQEALIMCRKMRLLGIQYDDVTYTTIISACANGGFFEMGKQVHAYILKNELNPNHNFLLSVSNSLITLYCKNDEVDEARKMFYEMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPEKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDYAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYARCGVVEAAESVFVTMPSVDLVSWNAMIAALGQHGHGVKAIELFDQMLKEGVFPDRITYLAVLTACSHAGLVAEGRHYFNSMLESYGITPGEDHYARMVDLFCRAGMFSYARNVIDTMPSKPGVPVWEALLAGCRIHGNMDLGIEAAEQLFDLMPQHDGAYVLLSNMYADVGRWNDVAKVRKLMRDHAVQKEPACSWIEVENKVHVFMVDDDVHPEVLSIYRYLEQVGLEMKILGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNLRICGDCHNAFKFMSKVASREIIVRDRKRRSSVKLGTKSVDLQGELNELKERWNR 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27003741 27006694 - CrPI670011_08g014030.1 Cre08g1403 506321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1403 808 SUPERFAMILY TPR-like 225 629 IPR011990 GO:0005515(InterPro)
Cre08g1403 808 FunFam Pentatricopeptide repeat-containing protein 488 697 - -
Cre08g1403 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Cre08g1403 808 Pfam PPR repeat family 256 301 IPR002885 -
Cre08g1403 808 Pfam PPR repeat family 110 157 IPR002885 -
Cre08g1403 808 Pfam PPR repeat family 490 537 IPR002885 -
Cre08g1403 808 NCBIfam pentatricopeptide repeat 492 525 IPR002885 -
Cre08g1403 808 NCBIfam pentatricopeptide repeat 392 423 IPR002885 -
Cre08g1403 808 NCBIfam pentatricopeptide repeat 332 358 IPR002885 -
Cre08g1403 808 NCBIfam pentatricopeptide repeat 256 288 IPR002885 -
Cre08g1403 808 NCBIfam pentatricopeptide repeat 225 251 IPR002885 -
Cre08g1403 808 NCBIfam pentatricopeptide repeat 527 561 IPR002885 -
Cre08g1403 808 NCBIfam pentatricopeptide repeat 114 146 IPR002885 -
Cre08g1403 808 NCBIfam pentatricopeptide repeat 360 389 IPR002885 -
Cre08g1403 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 252 IPR002885 -
Cre08g1403 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Cre08g1403 808 Gene3D Tetratricopeptide repeat domain 544 684 IPR011990 GO:0005515(InterPro)
Cre08g1403 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 560 IPR002885 -
Cre08g1403 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cre08g1403 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cre08g1403 808 PANTHER OS07G0578800 PROTEIN-RELATED 18 156 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cre08g1403 808 Pfam E motif 607 669 IPR046848 -
Cre08g1403 808 Pfam PPR repeat 392 421 IPR002885 -
Cre08g1403 808 Pfam PPR repeat 360 389 IPR002885 -
Cre08g1403 808 Pfam PPR repeat 464 487 IPR002885 -
Cre08g1403 808 Pfam PPR repeat 225 252 IPR002885 -
Cre08g1403 808 Pfam PPR repeat 332 359 IPR002885 -
Cre08g1403 808 Gene3D Tetratricopeptide repeat domain 332 417 IPR011990 GO:0005515(InterPro)
Cre08g1403 808 Gene3D Tetratricopeptide repeat domain 13 179 IPR011990 GO:0005515(InterPro)
Cre08g1403 808 Gene3D Tetratricopeptide repeat domain 256 331 IPR011990 GO:0005515(InterPro)
Cre08g1403 808 Gene3D Tetratricopeptide repeat domain 180 255 IPR011990 GO:0005515(InterPro)
Cre08g1403 808 Gene3D Tetratricopeptide repeat domain 429 543 IPR011990 GO:0005515(InterPro)
Cre08g1403 808 Pfam DYW family of nucleic acid deaminases 705 791 IPR032867 GO:0008270(InterPro)
Cre08g1403 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Cre08g1403 808 FunFam Pentatricopeptide repeat-containing protein 167 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1403 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1381 Cre-Chr8:26814052 Cre08g1403 Cre-Chr8:27003741 0.00E+00 dispersed
Cre08g1403 Cre-Chr8:27003741 Cre05g1070 Cre-Chr5:9963818 1.80E-118 dispersed
Cre08g1403 Cre-Chr8:27003741 Cre05g0977 Cre-Chr5:8998503 9.40E-115 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .