Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1406 ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTCTGTACAGAAATGAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAACAACAACAACAACAATCATCAACAACAACAACCAAATCCTTCTCTTACAAACCACTTGTCTTTCGGTGTTGGTCCCAGCCGCCGTAGCTTCATGATCAACGACCCTTCCGATGAGCCTTCCAGATCAGCTTTCACCGTCATGCGGCCTGCCGCTGCCGCCTTCGCCGCCGCCTCTGCCGCTACTGCTGGTGGCATGAATTGCCAAGACTGCGGCAACCAAGCTAAGAAGGATTGCGCTTATTTGCGGTGTAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACACACGTGAAAAGCACGTGGGTTCCGGCTGCGAAACGCCGTGAGAGGCAACAGCAAATTGCCGCCTTACAGCAACAGCAGCAGCAACAAGAACAGTTTCGTGGCGGTGAGAATTCCAAAAGACAAAGAGAAACCCAAACTGCCGCCGCTGTTACCGCTGCCACCGCCTCCGCCTCCGCTTGCCCTCGTTTGCCTTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGTCACGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAAATCCGTTACACCGCAGCCGGTGAGAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTAAACCTAATTGCCGGACCCACTTCCGCCACTACCTCCGCCGCAACTAGTACCAACCCCTCCGCTGCCGCCGCCGCCGCTCAGTTGCTTGACCCTTCTATCTATCCAGCTCCTCTAAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1029 52.38 MAGFFYLGGREGPPNKQEEEEEREQNLFLYRNEEIYNKGFEIWPQQYNNNNNNHQQQQPNPSLTNHLSFGVGPSRRSFMINDPSDEPSRSAFTVMRPAAAAFAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEQFRGGENSKRQRETQTAAAVTAATASASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEIRYTAAGESSSGHGGDGSTHPLNLIAGPTSATTSAATSTNPSAAAAAAQLLDPSIYPAPLNAFMAGTQFFPPSRS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27041455 27042893 + CrPI670011_08g014060.1 Cre08g1406 506324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1406 342 MobiDBLite consensus disorder prediction 272 304 - -
Cre08g1406 342 MobiDBLite consensus disorder prediction 278 304 - -
Cre08g1406 342 NCBIfam putative zinc finger domain, LRP1 type 114 156 IPR006510 -
Cre08g1406 342 NCBIfam LRP1 C-terminal domain 218 266 IPR006511 -
Cre08g1406 342 MobiDBLite consensus disorder prediction 46 67 - -
Cre08g1406 342 Pfam Domain of unknown function (DUF702) 112 267 - -
Cre08g1406 342 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 336 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cre08g1406 342 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2847 Cre-Chr5:39150394 Cre08g1406 Cre-Chr8:27041455 2.10E-27 dispersed
Cre03g1482 Cre-Chr3:29066714 Cre08g1406 Cre-Chr8:27041455 2.60E-27 transposed
Cre09g1468 Cre-Chr9:28707527 Cre08g1406 Cre-Chr8:27041455 8.90E-68 transposed
Cre04g1614 Cre-Chr4:34589757 Cre08g1406 Cre-Chr8:27041455 2.00E-60 wgd
Cre05g2032 Cre-Chr5:32310202 Cre08g1406 Cre-Chr8:27041455 4.80E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54224 PF05142 DUF702 5.20E-68 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1406 K27807 - csv:101213154 531.176