Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1410 ATGAAACGAAGAAAAGCCAGTTTTTGGATGGATTATTTGTTTGCAGGTTTTGTTGTGGTAGTTGGCATGTGGAGGCCGATGGCGGATGGTGCAGATCAGATCAACAAAACGACGTCGGTTGTGAAAGTGGGTGTGGTTCTTGATTTAAGTACTTGGGTTGGGAAAATGGGTTTGAGTTGTATCAATATTTCCCTCTCCGACTTCTATTCTTCTCATCCTCAACACAACACAACAATCCTCCTCCATGTCACTGACTCTAAGGATGATCTTGTGCTGGCTGCTACTCAAGGTTCGGAGCTCATACAGAAGAGTGAAGTGGAGGCCATCCTAGGGCCAGAAAGTTCGTTCCAGGCTCCCTACATTATCCAACTAAGTGAAAAATTTGAGGTTCCATTAATCTCCTTTGCACCACCACCAACCTCCACTTTCTCTAACCTAAAATCTCCATACTTATTCCGAGCACCCTACAACCATTTCTCCCAAATTTATGCAATTTGCGACATCATTAAAGCTTTTCAATGGGAGCAAGTTGTTATCATTTACCAAGACGATGAATTTGGAAAGTGGATTGTCGCAGATCTGATCCAGGCTTTACAGGTAGAGGTACAAACCGAAGAAGGAGTCAAGGAAGTATACACCTATGTTCATCGAATCGACCCGGCAGCTTCTGGCGACCAAATTAGAGAAGAGCTTGAAAGATTGAGCATGAAGCAGCGAGCAACCGTTTTCGTTGTCCACATGGTTCACAGTCTGGCATCTAAAGTATTCAGGATGGCCAATGAAATTGGGATAATGAGCGAAGGCTATGCTTGGATTCTCACCGAGTCCACAACAACATCCTTAAATTCTATGAATAACAACTTTTCAACTCTCAGCTGGATGCAGGGAGTTTTGGGAGTAAAAACCTACATTCCGAGAACAATGGAGGTAGACAACTTCACCATTCGATGGAGAAGGAAATTTCTACTAGACAATCCAGAAATGATCATCAAATATTATCCAAAACCAGATGTTTTTGGACTGTTGGCTTACGATGCTACTAGAGCGCTAGCCATGGCGGTCGAGAGAAGCTTCAATATTTCTTCAGGGGCATCTCAAAATGGAAAGAAAATCATGGAGTCGCTGTCAATGATAAAATTCAAAGGTCTGAGCGGGAGGGAGTTTAGTTTGGGTAAATTAGACCAACTAGAATCACAAAATTTGCAAATAGTAAATGTAATTGGAGATGGGGAAATTAGTACAGTGGGATATTGGAAGCCTGAAATGGGTTTGACTGGAGAATTTAATAAAAAAGTTAAATTAAGACCCATTATTTGGCCAGGATACTCCTTTCAACCCCCTAAGGGAAGGATTCCATTTAATCCCAGGAAGATACTGAGGATAGGAGTTCCATTTAATCTGAGTTTTACGCCTTTCTTCATACGTAACGACCACGGCATTGATGGATATTGTATAGATATCTTCCAGGCAGCTGTTGCAGAGCTTGATCCTTATTATTCTTTTCCATATGAATTTATTCCCTTCCACGGTTCATCCTACGATGACTTGATAGTGGCTGTGTACAGAGGGGAATTTGATGCTGCGGTTGGAGACATAACAATATTAGCGAACAGATCTTCGTTTGTAGATTTTACTCTGCCATTTACTGATCCTGGAATTGCTGTGATAGTTCCTAGACATGAGTCGGTGAAACATGAATGGCTATTCTTGAAGCCCTTGACTTTTAACCTTTGGATTACAAGCTTCTGCTTCTTCGTTTTCATGGGCTTCGTTGTTTGGATTCTCGAACATCAAAACAATGAAGACTTCCGTTGCGGTCCTCTGTCTCACCAAATCGCCACCAGTCTCTGGTTCTCATTCAGTATCATGGTCTTCGCCCAAAGGGAGACATTAGTGAGCAATCTATCAAGGTTAGTGGTGGTGATATGGTTCTTCGTAGTGTTCGTCCTAACACAGAGCTACACAGCTAGCTTAACGTCGTGGTTAACGGTTCAACAACTCCAACCAGTCACCGATATTGATCAGATAATAAAAAACAATTGGCATGTTGGATATCAAAAGGGCTCCTATGTTTACGACACATTAAAGTTTTTAGGCATTAAAGAAATGGTACCCTATGGCTCATTAGAGGAACTGCAGGAGCTCTTCACTAAAGGAAGCCGCAATGGTGGTATTGATGCTGCCATTGATGAGATCCCTTACATGAAGCTCCTTCTTACAACACAATTTGGTGAATATACCATGGGGCCTTCTCAATACAATTCCGGTGGTTTTGGATTTGCATTTGCACGAGGTTCATCTTTGGTCGACGGTATGTCGAAGGCCGTGTTGAAAGTGATGCAAAGTGATAAAATTAGCCAAATAGATAAGGAGTGGTTTGGGAATAAAATCAGCCACCAATCTGTCAGTAGTGATGGTTTAGAGGCGTCTTCTTCAAGCCTTGACCTGAGTTACTTTAAGAGCTTATTCTTCATCTCCGCTTTTACAGCTATCGTCCATCGTTTCATTTCTAAACGAAGATTCAAAGTCCATTTCAATTACTCTGACTCCACCACCATATGGAGAATAATAACTGCCACCACTTTCCGTATTCTCTTAATGAAAGACGACAACCGTCAGGAGGATCAGAATAATGTCGGACCATCGGCGGCGGTTGCAGTAATGGACGAGGCCAACACCCAATTCCCATCTCCTTCATCCCACGACTCTGTCTCAAGATTTGATGATACACGTACTAGTGAGCCATATGTTTAA 2754 42.19 MKRRKASFWMDYLFAGFVVVVGMWRPMADGADQINKTTSVVKVGVVLDLSTWVGKMGLSCINISLSDFYSSHPQHNTTILLHVTDSKDDLVLAATQGSELIQKSEVEAILGPESSFQAPYIIQLSEKFEVPLISFAPPPTSTFSNLKSPYLFRAPYNHFSQIYAICDIIKAFQWEQVVIIYQDDEFGKWIVADLIQALQVEVQTEEGVKEVYTYVHRIDPAASGDQIREELERLSMKQRATVFVVHMVHSLASKVFRMANEIGIMSEGYAWILTESTTTSLNSMNNNFSTLSWMQGVLGVKTYIPRTMEVDNFTIRWRRKFLLDNPEMIIKYYPKPDVFGLLAYDATRALAMAVERSFNISSGASQNGKKIMESLSMIKFKGLSGREFSLGKLDQLESQNLQIVNVIGDGEISTVGYWKPEMGLTGEFNKKVKLRPIIWPGYSFQPPKGRIPFNPRKILRIGVPFNLSFTPFFIRNDHGIDGYCIDIFQAAVAELDPYYSFPYEFIPFHGSSYDDLIVAVYRGEFDAAVGDITILANRSSFVDFTLPFTDPGIAVIVPRHESVKHEWLFLKPLTFNLWITSFCFFVFMGFVVWILEHQNNEDFRCGPLSHQIATSLWFSFSIMVFAQRETLVSNLSRLVVVIWFFVVFVLTQSYTASLTSWLTVQQLQPVTDIDQIIKNNWHVGYQKGSYVYDTLKFLGIKEMVPYGSLEELQELFTKGSRNGGIDAAIDEIPYMKLLLTTQFGEYTMGPSQYNSGGFGFAFARGSSLVDGMSKAVLKVMQSDKISQIDKEWFGNKISHQSVSSDGLEASSSSLDLSYFKSLFFISAFTAIVHRFISKRRFKVHFNYSDSTTIWRIITATTFRILLMKDDNRQEDQNNVGPSAAVAVMDEANTQFPSPSSHDSVSRFDDTRTSEPYV 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27078533 27084665 - CrPI670011_08g014100.1 Cre08g1410 506328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1410 917 Gene3D - 157 424 - -
Cre08g1410 917 SUPERFAMILY Periplasmic binding protein-like II 438 796 - -
Cre08g1410 917 Gene3D - 452 566 - -
Cre08g1410 917 MobiDBLite consensus disorder prediction 890 917 - -
Cre08g1410 917 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 843 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cre08g1410 917 Pfam Ligand-gated ion channel 795 828 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre08g1410 917 PIRSF IGluLR_plant 9 914 IPR017103 -
Cre08g1410 917 FunFam Glutamate receptor 454 566 - -
Cre08g1410 917 SUPERFAMILY Periplasmic binding protein-like I 39 449 IPR028082 -
Cre08g1410 917 CDD PBP1_GABAb_receptor_plant 42 425 IPR044440 -
Cre08g1410 917 SMART GluR_14 460 795 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre08g1410 917 Pfam Bacterial extracellular solute-binding proteins, family 3 466 574 IPR001638 -
Cre08g1410 917 FunFam Glutamate receptor 566 696 - -
Cre08g1410 917 Pfam Receptor family ligand binding region 60 408 IPR001828 -
Cre08g1410 917 Gene3D - 75 398 - -
Cre08g1410 917 Gene3D - 567 697 - -
Cre08g1410 917 CDD GluR_Plant 457 793 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1410 K05387 - - csv:101213397 971.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1718 Cre-Chr7:32632082 Cre08g1410 Cre-Chr8:27078533 1.20E-158 dispersed
Cre08g1336 Cre-Chr8:26428744 Cre08g1410 Cre-Chr8:27078533 2.20E-73 dispersed
Cre08g1337 Cre-Chr8:26432751 Cre08g1410 Cre-Chr8:27078533 1.30E-201 dispersed
Cre08g1410 Cre-Chr8:27078533 Cre11g2281 Cre-Chr11:34516349 5.00E-104 dispersed
Cre08g1410 Cre-Chr8:27078533 Cre08g0908 Cre-Chr8:22207375 5.70E-209 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202