Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre08g1412 | ATGGCGGACGCAGGCTCCGTCTCCCACAAGAGAATGTCTTGTTCTATCCCCGAGAGGTTCCAGCTCCATGCGGCCATGTTGGCCTTGCAATTCGGCTATGCCGGTTTCCATGTCGTCTCTAGAGCTGCTCTCAACATGGGCATCAGTAAACTTGTCTTCCCTGTCTACCGAAACGTCATCGCTTTGCTCCTCCTCCTCCCCTTCGCATATTTCATCGAAAAGAAAGATAGGCCTGCACTCACTGTCAACTTTGTCCTTCAGTTCTTCCTACTCGCTCTTGTTGGAATTACAGCCAATCAAGGGTTTTATTTGCTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAAAATTCTGTCCCTGCCATTACTTTCCTCATGGCTGCACTTCTCAGGATTGAGCAAGTGCGACTGAACCGAAAAGATGGGATAGCGAAGGTGATGGGTACAATATGTTGCGTAGCCGGAGCGACGGTGATCACGTTATACAAAGGGCCCACCATCTACAGCCCAGCAACGACAACGGTGATGGTACAAGAGACAGCAGAGACGGCGGGGACGATGCTGATGGGGCCGGGAATGTTCCCGTCGTTAGGCGACGCAAAGGGGAAAAGCTGGACGTTAGGGTGCGTTTACTTGATCGGACACTGCTTGTCGTGGTCGGCGTGGCTAGTCCTACAAGCACCGGTGCTGAAAAAATATCCGGCTCGCCTCTCAGTTACCTCCTTCACTTGCTTCTTTGGCCTCATCCAATTCCTCATCATCGCCCTCGCCTTCGAGCGCGACGCTCAGGCTTGGCTCTTCCACTCCGGCGCTGAAGCCTTTAGCATCGTTTATGCTGGGGTGGTGGCTTCGGGGATAGCGTTTGCTGTACAGATATGGTGCATTGACAGAGGTGGTCCGGTCTTCGTTGCTGTCTACCAACCGGTTCAGACCTTCGTTGTTGCTCTCATGGCTTCCTTCGCTTTGGGCGAGGAGTTCTATTTGGGAGGGATCATAGGAGCGGTGCTGATTATATCAGGACTGTACCTTGTGCTATGGGGAAAGAGCGAAGAAAAGAAGATCTTATTGGAAAGAGCTGTGATCCAGTCCGCCCCGGACCACGGCAGCAGCAGAACAAGTAGCCACGTCAAGCCGTCCATTACCCAGCCACTTCTCCATCCTACGGCTGACAATGTTTGA | 1188 | 52.36 | MADAGSVSHKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFIEKKDRPALTVNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPATTTVMVQETAETAGTMLMGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFLIIALAFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKILLERAVIQSAPDHGSSRTSSHVKPSITQPLLHPTADNV | 395 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 27110485 | 27114689 | + | CrPI670011_08g014120.1 | Cre08g1412 | 506330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre08g1412 | 395 | MobiDBLite | consensus disorder prediction | 368 | 395 | - | - | |
| Cre08g1412 | 395 | Pfam | EamA-like transporter family | 27 | 163 | IPR000620 | GO:0016020(InterPro) | |
| Cre08g1412 | 395 | Pfam | EamA-like transporter family | 210 | 348 | IPR000620 | GO:0016020(InterPro) | |
| Cre08g1412 | 395 | PANTHER | WAT1-RELATED PROTEIN | 24 | 367 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Cre08g1412 | 395 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 252 | 352 | - | - | |
| Cre08g1412 | 395 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 56 | 166 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre08g1412 | Cre-Chr8:27110485 | Cre10g1762 | Cre-Chr10:32014096 | 1.20E-62 | dispersed | |
| Cre03g1092 | Cre-Chr3:10206024 | Cre08g1412 | Cre-Chr8:27110485 | 1.50E-56 | transposed | |
| Cre06g2320 | Cre-Chr6:31148932 | Cre08g1412 | Cre-Chr8:27110485 | 1.80E-106 | transposed | |
| Cre09g2376 | Cre-Chr9:43102513 | Cre08g1412 | Cre-Chr8:27110485 | 1.10E-57 | transposed | |
| Cre11g2016 | Cre-Chr11:31933258 | Cre08g1412 | Cre-Chr8:27110485 | 5.70E-61 | transposed | |
| Cre05g2033 | Cre-Chr5:32340675 | Cre08g1412 | Cre-Chr8:27110485 | 4.80E-165 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre08g1412 | - | - | - | 0.0 |