Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1414 ATGTTGAAATCTTCATCCAACAACAAAAGACCCTCTTCAAGAAAGGGTTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCTTGTACTTATAAAGGTGTTCGTCAAAGAACATGGGGAAAATGGGTTGCTGAAATTCGAGAGCCAAATCGTGGAGCTCGTCTTTGGCTTGGTACTTTTGATACTTCTCATGATGCTGCTTTAGCCTATGACAATGCTGCTCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTCCCTCATCTTTCTCCTGTTTCTGCTTTTTCTTCTTCTTCTGATAATGTTGCTGCTAATTCTAATTCTAATTCTAATGCCAATGCCATTGTGGAAGATGTTGCTTCCTCTGTTTCTCATGAAAACAACAATAACAACACTGTATTGCCTAAGAAGAGATTTAGGGAGGAAGAGGAAGAACAAATTGGGGGGCTTTGGAGAGCTATGAGTATTAGTTTAGATGATTCTATCTGGGTTGAAGCAGCTATGTCTTTGGATTTTCCTATTGTTATGGAACATGAGCAGGATCATCATCATCAAGGCTTTTTTGCTGCTAATTTGATGGATACAAATGGAAATGGTGGATGTGGATGGGATACACTTCAATGGTGTTTATGA 633 39.97 MLKSSSNNKRPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGSDAKLNLPHLSPVSAFSSSSDNVAANSNSNSNANAIVEDVASSVSHENNNNNTVLPKKRFREEEEEQIGGLWRAMSISLDDSIWVEAAMSLDFPIVMEHEQDHHHQGFFAANLMDTNGNGGCGWDTLQWCL 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27121091 27121723 - CrPI670011_08g014140.1 Cre08g1414 506332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1414 210 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1414 210 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1414 210 SMART rav1_2 30 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1414 210 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677(InterPro)
Cre08g1414 210 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1414 210 CDD AP2 29 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1414 210 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1414 210 MobiDBLite consensus disorder prediction 1 29 - -
Cre08g1414 210 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Cre08g1414 210 Pfam AP2 domain 31 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1414 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 132 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1414 Cre-Chr8:27121091 Cre11g1080 Cre-Chr11:8259520 2.40E-30 dispersed
Cre05g2034 Cre-Chr5:32346683 Cre08g1414 Cre-Chr8:27121091 2.20E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54225 PF00847 AP2 2.60E-14 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1414 - - - 0.0