Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1426 ATGTTCATAAAATCCACCAGATATTTCTCCATCGACATCAGTGTAAGAAAATGTCAGCAGAAGAAAATGGGTCCCATCAAGAAAAGAGAGATTAAAGAAGAAGAAGAAGAAGAAACAGAAGAGGGGGTTTTTCTTCTTTTTCCCACTTGGGGTTTCTCTGTTCCTTCTGATTCTATCATGGGATCTACTGTTTTCCACTTTCTTCAAGATCAGTGTTTCTTGTCTGTTCTAATGCTGTACCTTACATCTGTTTGCCTTTTGTTGAGCTTCGTTATAGCTGATTATAGTTACATCAACGTGTTCTTGATGGGAATGGCGACCCCTGTAGAGCCTCCAAATGGGGTTAGATCTCAAGGAAAACATTACTTTTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCTATCAAGCCGATTGGTCGAGGGGCATATGGTATTGTGTGTTCTTCTGTGAACAGGGAAACAAACGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTTGAGAATCGTATTGATGCGCTCCGGACTTTGCGCGAATTGAAACTCCTTAGGCATCTTCGCCACGAAAATGTCATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTCAAAGATGTTTATTTGGTTTATGAACTGATGGATACTGATCTGCATCAGATTATTAAGTCTTCTCAAACTCTTACAAACGACCACTGCCAATATTTCCTCTTTCAGTTGCTCCGAGGCCTAAAGTATCTGCATTCTGCGAACATCCTACATCGGGACTTGAAGCCAGGGAACCTCCTTGTCAATGCAAATTGTGATCTTAAGATATGTGATTTTGGGTTAGCGCGTACGAGCAATGGGAAGAATCAATTTATGACAGAGTATGTTGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGCGAGAATTACGGGACGTCAATTGATGTGTGGTCTGTAGGATGCATCTTTGCTGAACTTCTTGGTAGGAAACCTATCTTCCCCGGTACAGAATGTCTGAATCAACTCAAATTGATAATTAACTTACTGGGTAGCCAGAGAGAGGAAGATCTTGAGTTCATAGACAATCCAAAGGCAAGAAGGTATATAAAATCCCTTCCATACTCTCCTGGGGCTCCTCTTTCCCGTCTTTATCCGAATGCTCATCCTCTTGCAATTGATCTGCTACAAAAGATGCTCGTCTTTGACCCATCAAAGAGGATTAGTGTAACTGAGGCATTGCAACATCCTTACATGTCCCCACTGTATGATCCAAACAGCAATCCTCCAGCTCAGGTGCCGATCGATCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCACCCCGAGGATCTGGAAGAACACGCAGAAATGACATGTTTCCACCCCGAACATACTACGAGTAGTACCGCAGTGTATTCTTGA 1473 42.02 MFIKSTRYFSIDISVRKCQQKKMGPIKKREIKEEEEEETEEGVFLLFPTWGFSVPSDSIMGSTVFHFLQDQCFLSVLMLYLTSVCLLLSFVIADYSYINVFLMGMATPVEPPNGVRSQGKHYFSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINLLGSQREEDLEFIDNPKARRYIKSLPYSPGAPLSRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEDLEEHAEMTCFHPEHTTSSTAVYS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27224856 27228372 - CrPI670011_08g014260.1 Cre08g1426 506344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1426 490 Gene3D Phosphorylase Kinase; domain 1 123 459 - -
Cre08g1426 490 SMART serkin_6 136 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1426 490 Pfam Protein kinase domain 138 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1426 490 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524(InterPro)
Cre08g1426 490 FunFam Mitogen-activated protein kinase 122 230 - -
Cre08g1426 490 ProSiteProfiles Protein kinase domain profile. 136 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1426 490 SUPERFAMILY Protein kinase-like (PK-like) 128 430 IPR011009 -
Cre08g1426 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g1426 490 FunFam Mitogen-activated protein kinase 220 449 - -
Cre08g1426 490 Gene3D Transferase(Phosphotransferase) domain 1 220 449 - -
Cre08g1426 490 ProSitePatterns MAP kinase signature. 171 274 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1426 490 CDD STKc_TEY_MAPK 130 465 - -
Cre08g1426 490 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 130 461 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1229 Cre-Chr7:25739193 Cre08g1426 Cre-Chr8:27224856 8.00E-168 dispersed
Cre08g1426 Cre-Chr8:27224856 Cre09g2280 Cre-Chr9:42001456 1.70E-114 dispersed
Cre08g1426 Cre-Chr8:27224856 Cre06g1109 Cre-Chr6:4984382 1.10E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64352 PF00069 Pkinase 4.80E-71 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1426 K20535 - csv:101213478 764.222