Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1451 ATGAGCGAGTTCCACGTGGCGCAAACCCACAATCCGTCTTTGAAGATGCTTCAAATTCCCCAACCGGATCGGAGCAATCAAAGCACGAGGCCTCCGCCCCAATTCCGGAGACAGGTTTCCTTTTGCCTCTCCTTGTTCTCGCTTGAATTCACATACCCTTTATCCTCCCCAAATTTTCTGGGAATTCCCAATACCTTTATCCGCAAACCCAAAGGGATTCATACCCTAGGATTGAATCAGTTGCGTCCTATTGATGCCATGGGTGAGAACATTGAGACTGTCGTGAAGGACAAGAGAATACATTCTCTTGATGTTACCCACATTGAGGATGCCCAGGAGCCGTGCATATGGTCATCATCAGTAGAATGCAAAATTGATATTGGAAAGCAGATCTTTTGCAATAGATCTTTGAATATGAAAAATATTGTTGCCGTGGGGTTTGACATGGATTACACGTTGGCACAATACAAGCCAGAAACTTTTGAGTCCCTCGCATATGAAGGCACAATAAGAAAGTTGGTTTATGATTTGGGATATTCTGAAGAGTTGCTAAATTGGTCATTTGATTGGAAATACATGGTCAGAGGTTTGGTTCTTGATAAAAAGAGAGGCAACATATTGAAGATGGATAGGCACAAGTATGTCAAAGTGGCTTACCATGGTTTCAAAGAGTTGTCCAAGGATGATAAAGTTGGGACCTATGGGAATACTCTCGTACGGGATTCTTTTGATGAACCTGACTATGCTCTCATTGATACCCTTTTTTCACTAGCTGAAGCCTACTTGTTTGCTCAACTGGTTGACTTCAAGGATAATAATCCAGACAAAGTTCCAGAAGATATCGATTATGCTCGGATGTATAAAGATGTTAGAGCTGCAGTAGATTTGTGTCACCGTGATGGAACCTTGAAGCAAATGGTTGCAAAAGATCCCGAAAGATATATCAATGTAGATACGTCAATTTTGCCTATGCTTAAAATGCTCAGAGATTCTGGCCGTTCTACTTTCTTGGTGACAAACAGCTTATGGGACTATACCAACGTCGTGATGAACTTCCTATGTAATTCTTCTGCACCAGCTGGTGATCGCAATTTCGATTGGCTTCAGTATTTTGATGTTGTTATCACTGGCAGTGCTAAACCAGGTTTTTTCCATGATGACAACCGTGCTAATCTATTTGAGGTTGAAGCAAAGTCCGGAATGCTACTTAATACTGATAATGGTTCACCGATGCCTCAGGTGGGAATGGCGTCACTAGCTTTGTCACCTACGAAGTTAGGTAAATCTTGCAGAGTTTTTCAGGGAGGCAATGTCAGGCATCTACACAAACTTCTTTCCATTGAATCAAGTTCACAGGTTCTTTATGTTGGAGATCACATCTATGGAGATATATTACGGAGCAAAAAGGCTCTTGGATGGAGGACTATGCTTGTTGTTCCAGAGCTTGAAAGGGAGGTCAAGCTCTTATGGGAGTTGAGGAATACCCGCAAGCAACTTCAACAATTAAGAAATGATCGGGATGCCATTGAGGACAAAATACATCATTTGAAGTGGTCTCTCAAGTTTGAAGATGTTGAGGCTGATGAGAAGGACAGATTATCTACTGAACTACATCAGTTAGAGAGTGAACGAGAACGAGTGCGGCTGAATCATCAAGACGCTCTACGGGAATGTCACCGACAGTTTCATGGGGTTTGGGGACAACTGATGAAGACTGGATATCAAAACTCTAGGTTTGCCCATCAAGTAGAGAGATTTGCATGCCTTTACAGCAGCCAAGTGACAAACTTGAGCCTATATTCCCCAGATAAATACTACAGGCCAAGTGAAGATTTTATGCCCCATGAATTTGGTATCATCCCTTTGTGA 1869 42.27 MSEFHVAQTHNPSLKMLQIPQPDRSNQSTRPPPQFRRQVSFCLSLFSLEFTYPLSSPNFLGIPNTFIRKPKGIHTLGLNQLRPIDAMGENIETVVKDKRIHSLDVTHIEDAQEPCIWSSSVECKIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLGYSEELLNWSFDWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFKELSKDDKVGTYGNTLVRDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDNNPDKVPEDIDYARMYKDVRAAVDLCHRDGTLKQMVAKDPERYINVDTSILPMLKMLRDSGRSTFLVTNSLWDYTNVVMNFLCNSSAPAGDRNFDWLQYFDVVITGSAKPGFFHDDNRANLFEVEAKSGMLLNTDNGSPMPQVGMASLALSPTKLGKSCRVFQGGNVRHLHKLLSIESSSQVLYVGDHIYGDILRSKKALGWRTMLVVPELEREVKLLWELRNTRKQLQQLRNDRDAIEDKIHHLKWSLKFEDVEADEKDRLSTELHQLESERERVRLNHQDALRECHRQFHGVWGQLMKTGYQNSRFAHQVERFACLYSSQVTNLSLYSPDKYYRPSEDFMPHEFGIIPL 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27431990 27438232 + CrPI670011_08g014510.1 Cre08g1451 506369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1451 622 Coils Coil 485 519 - -
Cre08g1451 622 Coils Coil 523 557 - -
Cre08g1451 622 FunFam Cytosolic purine 5-nucleotidase 291 508 - -
Cre08g1451 622 MobiDBLite consensus disorder prediction 1 33 - -
Cre08g1451 622 CDD HAD_cN-II 132 503 - -
Cre08g1451 622 Gene3D - 127 177 IPR023214 -
Cre08g1451 622 Gene3D - 291 509 IPR023214 -
Cre08g1451 622 Pfam 5' nucleotidase family 131 617 IPR008380 -
Cre08g1451 622 NCBIfam HAD-IG family 5'-nucleotidase 131 499 IPR008380 -
Cre08g1451 622 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 109 616 IPR008380 GO:0008253(PANTHER)
Cre08g1451 622 SUPERFAMILY HAD-like 129 618 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1451 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1173 Cre-Chr6:5573611 Cre08g1451 Cre-Chr8:27431990 4.00E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48