Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1467 ATGGTATCAGCAGAGAATAATTCTCAATCGGCGAAGGTTGTAGCATCTTCCTCGACGGGAGGTGAAATCGAGATCATCGACTCCGTGACTCCGGCGAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCGGCGGCGGAGGTTATAGCTCTGTCGCCAAAATCACTTCTAGCAACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGTGGCCACAACTTACCTTGGAAGCTCCGGCAACGGACGAGCAATGAGATTCGAAAACGAGTTTACGTCTGTCCGGAGCCTTCTTGCGTTCATCATAATCCGGCTAGGGCACTAGGCGATCTAACTGGCATTAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAATGGAAGTGCGAACGGTGCTCGAAGAAATACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGCGGAACTAGAGAATATAAATGCGATTGCGGAACTTTATTTTCTAGGAGAGATAGTTTCATCACCCATCGGGCTTTTTGTGATGCTTTGGCGTTTGCAAGCTCGGATTCCAATGTGATGGCTACCGCTGCTGCCGCCGGCGTGGCGGTTGCTTCTTCGGCATTGGCCACCGTGCCGCTATCTCCTGCTTTGTCAATTCAAAGCTCAGAAGCACCGGACATTCCCATGGGACCTCCGCCATTAACACCGGCAGCGACAAGCTTAACCTCCGCCGTGGCCTCCAACGTCAACAAAACCAGCCCAACAAACGGCGGTGGTACAAGCGTTTTCGCGGGTGTATTTGCTTCTTCTCCTCCCATTGTTACCAGTGCTGCTGCCCCAAATCCGCCCCATCCACTCACCACCGCCGTCAGCCGATCAGAAGGCGGCAATGAACCCCTAACCACCGTCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTTTTCCTCTCCTGTAGAGCCTCAGCCTCATCGGGCTCAACCTCAGCCTCTTCCATTTTTCAAAACCATCCTCCACATTACTCACCGTCGCTCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTGCTTCGTGCCTCTGGGCTGTCACTGTCACCGTCTCCCGGCCCCACCATCTCCATGACGGCTGGGCTCGGACTTGGATTTGGGAGCGAGCCCACCACGCGGGACCTCCTAGGACTGGGCATGGGCGGCGGCGGAGGAGTAGGAGGTGGGGTTTCCGGCGGCGGTCTTTCTGCTCTTTTCACGTCCTTTGATGGATGTGACGTTGAAGCTGCTTCGCCTTACGGCGGTGGGGGGAATAATGGGCTATGA 1380 55.51 MVSAENNSQSAKVVASSSTGGEIEIIDSVTPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVMATAAAAGVAVASSALATVPLSPALSIQSSEAPDIPMGPPPLTPAATSLTSAVASNVNKTSPTNGGGTSVFAGVFASSPPIVTSAAAPNPPHPLTTAVSRSEGGNEPLTTVIEPTSLSLSTSLFLSCRASASSGSTSASSIFQNHPPHYSPSLQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSPSPGPTISMTAGLGLGFGSEPTTRDLLGLGMGGGGGVGGGVSGGGLSALFTSFDGCDVEAASPYGGGGNNGL 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27543014 27545965 + CrPI670011_08g014670.1 Cre08g1467 506385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1467 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 377 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre08g1467 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cre08g1467 459 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Cre08g1467 459 Gene3D Classic Zinc Finger 62 105 - -
Cre08g1467 459 MobiDBLite consensus disorder prediction 281 308 - -
Cre08g1467 459 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Cre08g1467 459 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cre08g1467 459 FunFam protein indeterminate-domain 12-like 41 109 - -
Cre08g1467 459 SMART c2h2final6 138 158 IPR013087 -
Cre08g1467 459 SMART c2h2final6 62 84 IPR013087 -
Cre08g1467 459 SMART c2h2final6 103 133 IPR013087 -
Cre08g1467 459 MobiDBLite consensus disorder prediction 292 308 - -
Cre08g1467 459 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 196 - -
Cre08g1467 459 Pfam Zinc-finger of C2H2 type 62 84 IPR013087 -
Cre08g1467 459 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
Cre08g1467 459 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cre08g1467 459 Gene3D Classic Zinc Finger 117 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1377 Cre-Chr1:26983274 Cre08g1467 Cre-Chr8:27543014 2.50E-60 dispersed
Cre07g1271 Cre-Chr7:26724539 Cre08g1467 Cre-Chr8:27543014 1.00E-90 dispersed
Cre08g1467 Cre-Chr8:27543014 Cre09g0582 Cre-Chr9:5495427 5.00E-81 dispersed
Cre04g1553 Cre-Chr4:34142591 Cre08g1467 Cre-Chr8:27543014 2.10E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54231 PF12874 zf-met 0.0032 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1467 K25869 - csv:101217471 710.679