Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1481 ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAACTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTATTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG 693 44.73 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27641267 27641959 + CrPI670011_08g014810.1 Cre08g1481 506399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1481 230 CDD RING-HC_AtRMA-like 28 72 - -
Cre08g1481 230 MobiDBLite consensus disorder prediction 1 20 - -
Cre08g1481 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 221 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Cre08g1481 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Cre08g1481 230 MobiDBLite consensus disorder prediction 84 122 - -
Cre08g1481 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Cre08g1481 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Cre08g1481 230 SMART ring_2 30 70 IPR001841 -
Cre08g1481 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Cre08g1481 230 SUPERFAMILY RING/U-box 26 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1481 Cre-Chr8:27641267 Cre10g1877 Cre-Chr10:33346884 1.80E-26 dispersed
Cre04g1247 Cre-Chr4:31206173 Cre08g1481 Cre-Chr8:27641267 2.70E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1481 K10666 - csv:101221027 412.535