Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1489 ATGAAATTTGGGAATTTCTTGACGATTAATTCCGATCTGAAAATCGACGACGACGGTGATTTTCCGACACCGAACAGCGACGAGTCTCCGCCGAGATTTTCGCCGTGGAATCAAACTTATCCCTTTTTGAAATCTCCCTGTTTTTTCGAATTCCAAAACGGCGTTGCTCATCACCGGAATAATAATAATAATAATTCTCTCATTGGGTCTCTTGTTCGTGAGGAAGGCCACGTGTACTCGCTAGCAACCGCCGGAGAACTTCTCTACACCGGCTCCGACAGCAAAAACATTCGAGTATGGAAAAATCTCAAGGAATTTACTGGGTTTAAATCGAGCAGTGGATTGGTTAAGGCAATTATAATCTCCGGCGAAAAAATCTTCACCGGTCACCAGGACGGCAAAATTCGGATCTGGAAAGTTGCTGTGAAAAACCCAAGCGGCGGTCACCGGCGGGCTGGGACGTTGCCGGCTATGAGAGATGTAGTAAGAAGCTCGATGAACCCTCAAAACTACGTCGTTGTGGGACGGAACCGGAGCCGGCTTTGGTTTAAGCATAGCGATGCGGTTTCGTGCTTGTGCTTGAGTGAAGACAGGACTTTATTGTATTCCTCTTCTTGGGATAAAACTTTGAAAGTATGGAGAGTTTCAGATTCCAAGTGCCTCGAATCACTTACTGTTCACGACGACGCCGTCAATGCCGTCGTCGCGGCCTCCGATGGCTTGGTCATTACTGGCTCGGCTGACGGCACCGCCAAGGTATGGCGGAGACAGCATGAAGAAGAGCACGACGCAACCAAACACATACTGGAGCAAACGCTGCTGAAGCAAGACAGTGCAGTGACGGCGGTGGCCGTCAACGCCGCCGGCACGGTGGTGTACTGTGGATCCTCCGACGGGCTGGTCAACTTCTGGGAGCGAGAAAAGCGGTTGACTTACGGTGGAGCTCTCAAGGGCCACAACTTAGCAGTTCTCTGCCTCGCGGCGGCCGGAAGCTGCATGGTACTAAGCGGCGCCGCCGATAAAACCATATGCGTGTGGCGGAGGGATGGGCCTTTCCACACGTGCGTATCGGTTCTGACGGGTCACACTGGACCTGTTAAATGTTTGGCCGTCGAGGAAGATCGTCGCCTCGGCAGTCGGCGGTGGATTGCGTACAGTGGTAGCCTGGACAGATCGGTGAAGGTGTGGGAGGTTTCCGACGGCCTTGGTGGCTGA 1215 52.43 MKFGNFLTINSDLKIDDDGDFPTPNSDESPPRFSPWNQTYPFLKSPCFFEFQNGVAHHRNNNNNNSLIGSLVREEGHVYSLATAGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGEKIFTGHQDGKIRIWKVAVKNPSGGHRRAGTLPAMRDVVRSSMNPQNYVVVGRNRSRLWFKHSDAVSCLCLSEDRTLLYSSSWDKTLKVWRVSDSKCLESLTVHDDAVNAVVAASDGLVITGSADGTAKVWRRQHEEEHDATKHILEQTLLKQDSAVTAVAVNAAGTVVYCGSSDGLVNFWEREKRLTYGGALKGHNLAVLCLAAAGSCMVLSGAADKTICVWRRDGPFHTCVSVLTGHTGPVKCLAVEEDRRLGSRRWIAYSGSLDRSVKVWEVSDGLGG 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27702745 27704713 + CrPI670011_08g014890.1 Cre08g1489 506407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1489 404 Gene3D - 173 266 IPR015943 GO:0005515(InterPro)
Cre08g1489 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 404 - -
Cre08g1489 404 Gene3D - 267 403 IPR015943 GO:0005515(InterPro)
Cre08g1489 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 254 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 FunFam BnaA09g28200D protein 172 259 - -
Cre08g1489 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 254 - -
Cre08g1489 404 Pfam WD domain, G-beta repeat 315 346 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 Pfam WD domain, G-beta repeat 354 396 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 Pfam WD domain, G-beta repeat 219 254 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 Pfam WD domain, G-beta repeat 275 304 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 Pfam WD domain, G-beta repeat 184 213 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 Pfam WD domain, G-beta repeat 75 100 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 219 - -
Cre08g1489 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 305 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 ProSitePatterns Trp-Asp (WD) repeats signature. 384 398 IPR019775 -
Cre08g1489 404 Gene3D - 58 153 IPR015943 GO:0005515(InterPro)
Cre08g1489 404 SUPERFAMILY WD40 repeat-like 64 400 IPR036322 GO:0005515(InterPro)
Cre08g1489 404 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Cre08g1489 404 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Cre08g1489 404 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Cre08g1489 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 401 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 346 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 SMART WD40_4 217 255 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 SMART WD40_4 176 214 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 SMART WD40_4 266 305 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 SMART WD40_4 102 139 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 SMART WD40_4 352 397 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 SMART WD40_4 64 101 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 SMART WD40_4 309 347 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 223 IPR001680 GO:0005515(InterPro)
Cre08g1489 404 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 399 IPR045182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1489 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1624 Cre-Chr2:28959203 Cre08g1489 Cre-Chr8:27702745 3.40E-109 dispersed
Cre07g1677 Cre-Chr7:32208578 Cre08g1489 Cre-Chr8:27702745 1.40E-43 dispersed
Cre07g1678 Cre-Chr7:32219517 Cre08g1489 Cre-Chr8:27702745 3.20E-40 dispersed
Cre08g1489 Cre-Chr8:27702745 Cre09g1778 Cre-Chr9:36176454 7.40E-44 dispersed
Cre02g0914 Cre-Chr2:6234719 Cre08g1489 Cre-Chr8:27702745 1.90E-107 wgd
Cre05g2104 Cre-Chr5:32932575 Cre08g1489 Cre-Chr8:27702745 5.60E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27