Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1490 | ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCAAATTGTGAGAATTCTAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGCAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA | 798 | 41.73 | MFSSTTHHSHWNNFIMDYTTTTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQQQEKDRHNGNANMKISSGVKKQNNNNNNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27707442 | 27710465 | - | CrPI670011_08g014900.1 | Cre08g1490 | 506408 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1490 | 265 | MobiDBLite | consensus disorder prediction | 200 | 231 | - | - | |
Cre08g1490 | 265 | Gene3D | - | 77 | 134 | - | - | |
Cre08g1490 | 265 | SUPERFAMILY | Homeodomain-like | 75 | 132 | IPR009057 | - | |
Cre08g1490 | 265 | Pfam | Myb-like DNA-binding domain | 79 | 130 | IPR001005 | - | |
Cre08g1490 | 265 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 47 | 245 | IPR044847 | GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro) | |
Cre08g1490 | 265 | MobiDBLite | consensus disorder prediction | 22 | 50 | - | - | |
Cre08g1490 | 265 | MobiDBLite | consensus disorder prediction | 149 | 169 | - | - | |
Cre08g1490 | 265 | FunFam | Myb family transcription factor | 76 | 134 | - | - | |
Cre08g1490 | 265 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 78 | 131 | IPR006447 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g1490 | Cre-Chr8:27707442 | Cre09g1112 | Cre-Chr9:11664730 | 1.90E-32 | dispersed | |
Cre05g2130 | Cre-Chr5:33126816 | Cre08g1490 | Cre-Chr8:27707442 | 9.80E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54234 | PF00249 | Myb_DNA-binding | 1.00E-05 | CL0123 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1490 | - | - | - | 0.0 |