Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1490 ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCAAATTGTGAGAATTCTAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGCAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA 798 41.73 MFSSTTHHSHWNNFIMDYTTTTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQQQEKDRHNGNANMKISSGVKKQNNNNNNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27707442 27710465 - CrPI670011_08g014900.1 Cre08g1490 506408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1490 265 MobiDBLite consensus disorder prediction 200 231 - -
Cre08g1490 265 Gene3D - 77 134 - -
Cre08g1490 265 SUPERFAMILY Homeodomain-like 75 132 IPR009057 -
Cre08g1490 265 Pfam Myb-like DNA-binding domain 79 130 IPR001005 -
Cre08g1490 265 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 47 245 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cre08g1490 265 MobiDBLite consensus disorder prediction 22 50 - -
Cre08g1490 265 MobiDBLite consensus disorder prediction 149 169 - -
Cre08g1490 265 FunFam Myb family transcription factor 76 134 - -
Cre08g1490 265 NCBIfam myb-like DNA-binding domain, SHAQKYF class 78 131 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1490 Cre-Chr8:27707442 Cre09g1112 Cre-Chr9:11664730 1.90E-32 dispersed
Cre05g2130 Cre-Chr5:33126816 Cre08g1490 Cre-Chr8:27707442 9.80E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54234 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1490 - - - 0.0