Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1520 ATGGGGATCGCAAACCTCTCATATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCCCCGGTTTACGCCGAAGTTGTTGTAAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTTTCAAATCGGGTTTATGCTTCGGATGAAGCAAGAAAAAATGCTTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCGAATTATCCCAACTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGATTTTGGCTGGGCCTTCCTTCTCATTTCTGCAAGATCCATCTTCCAAATCGTGATGGAGTCATGACTTTAATAGATGAAGATGGCAATGAGTATCCGACTATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTTCAGTTGCTCATAAGTTGGCAGATGGGGATGCTGTAGTTTTTCAATTCATTAAACCTACAAGATGCAAGGTGTACATTCTTAGGGCGAATAGTTCCAGACAAGATAGCGATTCTAACAGTAGCTAA 690 44.2 MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRISKARDFSNRVYASDEARKNAFERAEQLQSGLEPNYPNFIKSMLQSHVSGGFWLGLPSHFCKIHLPNRDGVMTLIDEDGNEYPTIYLARKTGLSGGWKGFSVAHKLADGDAVVFQFIKPTRCKVYILRANSSRQDSDSNSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27891817 27893697 + CrPI670011_08g015200.1 Cre08g1520 506438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1520 229 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
Cre08g1520 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 219 IPR044837 -
Cre08g1520 229 Coils Coil 6 26 - -
Cre08g1520 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Cre08g1520 229 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Cre08g1520 229 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
Cre08g1520 229 Pfam B3 DNA binding domain 127 217 IPR003340 GO:0003677(InterPro)
Cre08g1520 229 Gene3D - 101 219 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1592 Cre-Chr2:28608470 Cre08g1520 Cre-Chr8:27891817 1.50E-30 dispersed
Cre05g1174 Cre-Chr5:11310470 Cre08g1520 Cre-Chr8:27891817 2.40E-33 dispersed
Cre08g1520 Cre-Chr8:27891817 Cre02g0947 Cre-Chr2:6687545 1.10E-63 dispersed
Cre08g1519 Cre-Chr8:27886123 Cre08g1520 Cre-Chr8:27891817 1.00E-103 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54239 PF02362 B3 1.70E-13 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1520 - - - 0.0