Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1520 | ATGGGGATCGCAAACCTCTCATATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCCCCGGTTTACGCCGAAGTTGTTGTAAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTTTCAAATCGGGTTTATGCTTCGGATGAAGCAAGAAAAAATGCTTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCGAATTATCCCAACTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGATTTTGGCTGGGCCTTCCTTCTCATTTCTGCAAGATCCATCTTCCAAATCGTGATGGAGTCATGACTTTAATAGATGAAGATGGCAATGAGTATCCGACTATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTTCAGTTGCTCATAAGTTGGCAGATGGGGATGCTGTAGTTTTTCAATTCATTAAACCTACAAGATGCAAGGTGTACATTCTTAGGGCGAATAGTTCCAGACAAGATAGCGATTCTAACAGTAGCTAA | 690 | 44.2 | MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRISKARDFSNRVYASDEARKNAFERAEQLQSGLEPNYPNFIKSMLQSHVSGGFWLGLPSHFCKIHLPNRDGVMTLIDEDGNEYPTIYLARKTGLSGGWKGFSVAHKLADGDAVVFQFIKPTRCKVYILRANSSRQDSDSNSS | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27891817 | 27893697 | + | CrPI670011_08g015200.1 | Cre08g1520 | 506438 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1520 | 229 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 218 | IPR015300 | - | |
Cre08g1520 | 229 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 12 | 219 | IPR044837 | - | |
Cre08g1520 | 229 | Coils | Coil | 6 | 26 | - | - | |
Cre08g1520 | 229 | ProSiteProfiles | B3 DNA-binding domain profile. | 127 | 218 | IPR003340 | GO:0003677(InterPro) | |
Cre08g1520 | 229 | SMART | B3_2 | 127 | 218 | IPR003340 | GO:0003677(InterPro) | |
Cre08g1520 | 229 | CDD | B3_DNA | 125 | 216 | IPR003340 | GO:0003677(InterPro) | |
Cre08g1520 | 229 | Pfam | B3 DNA binding domain | 127 | 217 | IPR003340 | GO:0003677(InterPro) | |
Cre08g1520 | 229 | Gene3D | - | 101 | 219 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1592 | Cre-Chr2:28608470 | Cre08g1520 | Cre-Chr8:27891817 | 1.50E-30 | dispersed | |
Cre05g1174 | Cre-Chr5:11310470 | Cre08g1520 | Cre-Chr8:27891817 | 2.40E-33 | dispersed | |
Cre08g1520 | Cre-Chr8:27891817 | Cre02g0947 | Cre-Chr2:6687545 | 1.10E-63 | dispersed | |
Cre08g1519 | Cre-Chr8:27886123 | Cre08g1520 | Cre-Chr8:27891817 | 1.00E-103 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54239 | PF02362 | B3 | 1.70E-13 | CL0405 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1520 | - | - | - | 0.0 |