Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre08g1540 | ATGGCTCCAATTTTTTTACTCATTTCCATCTTTCTTCTTCTTCTTCTTCTTCTATTTTTCTTCCAAATTCATAACAACAATAAGTTTCCTAAGAAGAAACTCCCTCCTGGCTCAACGGGTTGGCCTCTAATTGGCGAGACCTTTCATTTTTATTCTCAAGATCCAACCTCCTTCTTTCTTGGAAAACAAAAAAGATATGGGGAGATATTCAAGACCCACATTCATGGATGTCCGTGTGTGATGTTAGCGACTCCCGAGGCGGCTCGGTTCGTGCTAGTGACACAGGCTCATCTCTTCAAACCTACATATCCACAAAGTAAAGAGCGATTAATTGGGCCATCGGCTCTGTTTTTCCACCAAAGTGAAACCCATTTGCGTTTGCGTAAGCTAATCCAAAGCTCTCTGTCACCGGACCCTGTTCGAGCCTTAGTCCCTGACATCCACGCCCTAGCCATCTCTGCATTGCCCTCATGGCTCAATGGCCATCTCATTAACACTTTCCATCAAATGAAGAAGTTCTCTTTTGAAGTGGGGATTTTGGCAATTTTCGGGCATTTGGAAGACACCAATTACAGAGAGGAACTAATGAAAAACTATTCCATAGTGAACAAAGGCTATAATTCTTTCCCCACCAACATTCCCGGAACGCTTTACAAAAAAGCACTTAAAGCAAGAAAGAGGCTGGGAGAGATCATAAGCTGTATAATCTCAGAGAAAAGGGAGAAAAGAAAAGAATTAGGGGAGAAGAATCTATTAGCGTGTTTGCTAAAATGGAGAGATGAAAATGGAGAAACTTTAAGTGATGAACAGATCGCCGACAACATCATCGGAGTTCTGTTTGCTGCTCAGGACACGACGGCCAGTGTTCTCACTTGGGTTGTTAAATATCTACATGATAACCACAAAGTTCTAGAAGCTGTCAAGGTGGAACAAAAGTCAATTGAAGAAGGCATTAATGAGGGGAGCCGACCAATGAGCTGGGCTCAGACACGAAACATGCCCTTTACCAACAAGGTGGTGTTGGAGAGCTTGAGAATGGCAAGTATTATATCATTCACTTTTAGAGAAGCTGTGGCAGATGTTGAATATAAAGGATATTTAATTCCAAAGGGTTGGAAAGTAATGCCTTTGTTCAGGAATATTCACCACAATCCTGACTACTTTGTTGACCCTCATAAATTTGATCCTTCAAGATTTGAGGTTGCTCCAAGACCCAATACGTTCATGCCATTTGGCAGTGGGGTCCATGCCTGCCCAGGAAATGACCTTGCCAAGCTTGAAATCTTGATCATGATCCACCATCTAGTCACCAAATTCAGGTGGGAATTGGCAGGACAGAGAGATGGGATTCAGCATGGGCCTTTTCCAGTGCCTATAAATGGGCTTCCCATTAGAGTCTGGAGATTATCCACTTGA | 1416 | 42.8 | MAPIFLLISIFLLLLLLLFFFQIHNNNKFPKKKLPPGSTGWPLIGETFHFYSQDPTSFFLGKQKRYGEIFKTHIHGCPCVMLATPEAARFVLVTQAHLFKPTYPQSKERLIGPSALFFHQSETHLRLRKLIQSSLSPDPVRALVPDIHALAISALPSWLNGHLINTFHQMKKFSFEVGILAIFGHLEDTNYREELMKNYSIVNKGYNSFPTNIPGTLYKKALKARKRLGEIISCIISEKREKRKELGEKNLLACLLKWRDENGETLSDEQIADNIIGVLFAAQDTTASVLTWVVKYLHDNHKVLEAVKVEQKSIEEGINEGSRPMSWAQTRNMPFTNKVVLESLRMASIISFTFREAVADVEYKGYLIPKGWKVMPLFRNIHHNPDYFVDPHKFDPSRFEVAPRPNTFMPFGSGVHACPGNDLAKLEILIMIHHLVTKFRWELAGQRDGIQHGPFPVPINGLPIRVWRLST | 471 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 28014050 | 28018557 | - | CrPI670011_08g015400.1 | Cre08g1540 | 506458 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre08g1540 | 471 | PRINTS | P450 superfamily signature | 418 | 429 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | PRINTS | P450 superfamily signature | 281 | 298 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | PRINTS | P450 superfamily signature | 409 | 418 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | PRINTS | P450 superfamily signature | 338 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | CDD | CYP90-like | 63 | 466 | - | - | |
| Cre08g1540 | 471 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 411 | 420 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cre08g1540 | 471 | FunFam | Abscisic acid 8 | 24 | 468 | - | - | |
| Cre08g1540 | 471 | PRINTS | E-class P450 group I signature | 63 | 82 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | PRINTS | E-class P450 group I signature | 377 | 401 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | PRINTS | E-class P450 group I signature | 408 | 418 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | PRINTS | E-class P450 group I signature | 418 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | PRINTS | E-class P450 group I signature | 270 | 287 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | PRINTS | E-class P450 group I signature | 337 | 355 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | Pfam | Cytochrome P450 | 35 | 447 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | PANTHER | CYTOCHROME P450 26 | 33 | 445 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Cre08g1540 | 471 | SUPERFAMILY | Cytochrome P450 | 30 | 467 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre08g1540 | 471 | Gene3D | Cytochrome P450 | 23 | 469 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre07g1471 | Cre-Chr7:29938299 | Cre08g1540 | Cre-Chr8:28014050 | 6.50E-153 | dispersed | |
| Cre08g1540 | Cre-Chr8:28014050 | Cre09g0926 | Cre-Chr9:9360740 | 4.10E-70 | dispersed | |
| Cre03g1448 | Cre-Chr3:27734479 | Cre08g1540 | Cre-Chr8:28014050 | 3.10E-65 | transposed | |
| Cre06g2279 | Cre-Chr6:30715970 | Cre08g1540 | Cre-Chr8:28014050 | 1.70E-63 | transposed | |
| Cre02g0952 | Cre-Chr2:6742332 | Cre08g1540 | Cre-Chr8:28014050 | 1.60E-174 | wgd | |
| Cre05g2177 | Cre-Chr5:33509965 | Cre08g1540 | Cre-Chr8:28014050 | 4.80E-188 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre08g1540 | K09843 | - | vvi:100245540 | 682.945 |