Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1544 ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGGAAACGGCGGAGGAGGCGGAAGACCTCCGGCGAACTATCCGTTAGCGCGACAATCATCGATCTACTCGCTGACCTTCGATGAGTTCCAGAGCATGGGGAGTATAGGCAAGGATTTTGGGTCGATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCGTCTGCTGCTGCTGTTGATAAAGAAGGGGCTGGTAGTGTTGGTCGTAGTGGTGGGTATTTGCAGAGACAGGGCTCCTTGACGCTGCCTCGGACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGATGGGGCTACTGTTGCTTCTAATTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAGGATACTCAGGTGACTGCAAACCCCAACAATGGAGGGTTCTTTGGCAATAACACTGGTTTTGGAATTGGTTTTCAGCGGCAGGCTAAAGTTCCTGAGAATAATAATCACATTCCGATTCAATCGTCGAACTTATCGCTGAATGTCAATGGAGTCAGAACACATCAGCCGCAGCCAATTTTTCCAAAGCAGCCTGCTGTGACATATGGATCTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGGGGAATTATGGGGATTGGAGATCAAGGGTTGAATACAAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGAATGGGAGTGGTTAATATAGCAGCTGCTCCGTTACCTATTGCAACAGAATCGCCAAGGGACCAACTATCATCTGATGGGATTGGTAAAAGCAATGGTGATACCTCGTCTGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGGGGGAGGAGAAGTAACGGAATTGTCGACAAGGTTGTCGAGAGGAGGCAACGGAGAATGATTAAAAACAGAGAGTCCGCTGCAAGATCGCGGGCTCGAAAGCAGGCCTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGAAATCATGGAAATGCAGAAGAACCGGGCATTGGAAGTAATGGATAAGCAACAAGGAATAAAGAAGCGATGCTTAAGACGAACACAGACTGGCCCATGGTGCCGTGTAGCATATGTCTCAAGGTGTCTTGCTTGCAGAGTATCGTATAACGTATTTGCTTCGAAGTGGATCATCAAGAGTTCAGTAGCTTTTGAGTGGAAGCAAAACACACATAGTTTGATTCGTTTTCTGGAAATACTACTTCACACAGCTCCTCCACCCTCTGCCATGGAGAGGGAAATAAGTATTTTGTGGCATTTCCTGATATGGCCCGACTGCTGCTGTGGTTGTGGGTAA 1470 47.28 MNFKDFGNDPSAGNGGGGGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAVDKEGAGSVGRSGGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHASAKDGATVASNLQQRQQTLGEMTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFGIGFQRQAKVPENNNHIPIQSSNLSLNVNGVRTHQPQPIFPKQPAVTYGSQLALPSDGQLASPGIRGGIMGIGDQGLNTNLMQGSALQGGRMGVVNIAAAPLPIATESPRDQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGIVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAEIMEMQKNRALEVMDKQQGIKKRCLRRTQTGPWCRVAYVSRCLACRVSYNVFASKWIIKSSVAFEWKQNTHSLIRFLEILLHTAPPPSAMEREISILWHFLIWPDCCCGCG 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28089715 28092631 + CrPI670011_08g015440.1 Cre08g1544 506462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1544 489 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 331 388 - -
Cre08g1544 489 MobiDBLite consensus disorder prediction 1 26 - -
Cre08g1544 489 CDD bZIP_plant_BZIP46 333 385 - -
Cre08g1544 489 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 410 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cre08g1544 489 MobiDBLite consensus disorder prediction 286 315 - -
Cre08g1544 489 Gene3D - 331 387 - -
Cre08g1544 489 SMART brlzneu 329 393 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1544 489 Pfam bZIP transcription factor 333 385 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1544 489 Coils Coil 349 386 - -
Cre08g1544 489 SUPERFAMILY Leucine zipper domain 333 381 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1544 489 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 336 351 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1544 489 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 331 382 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1544 489 MobiDBLite consensus disorder prediction 287 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2524 Cre-Chr2:38532586 Cre08g1544 Cre-Chr8:28089715 9.80E-29 dispersed
Cre08g1544 Cre-Chr8:28089715 Cre10g2018 Cre-Chr10:34824571 4.90E-42 dispersed
Cre08g0800 Cre-Chr8:21068670 Cre08g1544 Cre-Chr8:28089715 5.10E-32 transposed
Cre10g0313 Cre-Chr10:1998109 Cre08g1544 Cre-Chr8:28089715 7.20E-11 transposed
Cre11g1960 Cre-Chr11:31386481 Cre08g1544 Cre-Chr8:28089715 4.60E-10 transposed
Cre02g0961 Cre-Chr2:6883453 Cre08g1544 Cre-Chr8:28089715 2.20E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54240 PF00170 bZIP_1 4.90E-13 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1544 K14432 - csv:101223043 716.842