Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1544 | ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGGAAACGGCGGAGGAGGCGGAAGACCTCCGGCGAACTATCCGTTAGCGCGACAATCATCGATCTACTCGCTGACCTTCGATGAGTTCCAGAGCATGGGGAGTATAGGCAAGGATTTTGGGTCGATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCGTCTGCTGCTGCTGTTGATAAAGAAGGGGCTGGTAGTGTTGGTCGTAGTGGTGGGTATTTGCAGAGACAGGGCTCCTTGACGCTGCCTCGGACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGATGGGGCTACTGTTGCTTCTAATTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAGGATACTCAGGTGACTGCAAACCCCAACAATGGAGGGTTCTTTGGCAATAACACTGGTTTTGGAATTGGTTTTCAGCGGCAGGCTAAAGTTCCTGAGAATAATAATCACATTCCGATTCAATCGTCGAACTTATCGCTGAATGTCAATGGAGTCAGAACACATCAGCCGCAGCCAATTTTTCCAAAGCAGCCTGCTGTGACATATGGATCTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGGGGAATTATGGGGATTGGAGATCAAGGGTTGAATACAAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGAATGGGAGTGGTTAATATAGCAGCTGCTCCGTTACCTATTGCAACAGAATCGCCAAGGGACCAACTATCATCTGATGGGATTGGTAAAAGCAATGGTGATACCTCGTCTGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGGGGGAGGAGAAGTAACGGAATTGTCGACAAGGTTGTCGAGAGGAGGCAACGGAGAATGATTAAAAACAGAGAGTCCGCTGCAAGATCGCGGGCTCGAAAGCAGGCCTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGAAATCATGGAAATGCAGAAGAACCGGGCATTGGAAGTAATGGATAAGCAACAAGGAATAAAGAAGCGATGCTTAAGACGAACACAGACTGGCCCATGGTGCCGTGTAGCATATGTCTCAAGGTGTCTTGCTTGCAGAGTATCGTATAACGTATTTGCTTCGAAGTGGATCATCAAGAGTTCAGTAGCTTTTGAGTGGAAGCAAAACACACATAGTTTGATTCGTTTTCTGGAAATACTACTTCACACAGCTCCTCCACCCTCTGCCATGGAGAGGGAAATAAGTATTTTGTGGCATTTCCTGATATGGCCCGACTGCTGCTGTGGTTGTGGGTAA | 1470 | 47.28 | MNFKDFGNDPSAGNGGGGGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAVDKEGAGSVGRSGGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHASAKDGATVASNLQQRQQTLGEMTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFGIGFQRQAKVPENNNHIPIQSSNLSLNVNGVRTHQPQPIFPKQPAVTYGSQLALPSDGQLASPGIRGGIMGIGDQGLNTNLMQGSALQGGRMGVVNIAAAPLPIATESPRDQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGIVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAEIMEMQKNRALEVMDKQQGIKKRCLRRTQTGPWCRVAYVSRCLACRVSYNVFASKWIIKSSVAFEWKQNTHSLIRFLEILLHTAPPPSAMEREISILWHFLIWPDCCCGCG | 489 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28089715 | 28092631 | + | CrPI670011_08g015440.1 | Cre08g1544 | 506462 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1544 | 489 | FunFam | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | 331 | 388 | - | - | |
Cre08g1544 | 489 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cre08g1544 | 489 | CDD | bZIP_plant_BZIP46 | 333 | 385 | - | - | |
Cre08g1544 | 489 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 29 | 410 | IPR043452 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro) | |
Cre08g1544 | 489 | MobiDBLite | consensus disorder prediction | 286 | 315 | - | - | |
Cre08g1544 | 489 | Gene3D | - | 331 | 387 | - | - | |
Cre08g1544 | 489 | SMART | brlzneu | 329 | 393 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1544 | 489 | Pfam | bZIP transcription factor | 333 | 385 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1544 | 489 | Coils | Coil | 349 | 386 | - | - | |
Cre08g1544 | 489 | SUPERFAMILY | Leucine zipper domain | 333 | 381 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1544 | 489 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 336 | 351 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1544 | 489 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 331 | 382 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1544 | 489 | MobiDBLite | consensus disorder prediction | 287 | 311 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2524 | Cre-Chr2:38532586 | Cre08g1544 | Cre-Chr8:28089715 | 9.80E-29 | dispersed | |
Cre08g1544 | Cre-Chr8:28089715 | Cre10g2018 | Cre-Chr10:34824571 | 4.90E-42 | dispersed | |
Cre08g0800 | Cre-Chr8:21068670 | Cre08g1544 | Cre-Chr8:28089715 | 5.10E-32 | transposed | |
Cre10g0313 | Cre-Chr10:1998109 | Cre08g1544 | Cre-Chr8:28089715 | 7.20E-11 | transposed | |
Cre11g1960 | Cre-Chr11:31386481 | Cre08g1544 | Cre-Chr8:28089715 | 4.60E-10 | transposed | |
Cre02g0961 | Cre-Chr2:6883453 | Cre08g1544 | Cre-Chr8:28089715 | 2.20E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54240 | PF00170 | bZIP_1 | 4.90E-13 | CL0018 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1544 | K14432 | - | csv:101223043 | 716.842 |