Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1546 ATGGATATGGCGGACGCGGAGCATGCAATTAAGTGGGGAAGAGATGAGATGGATATTGTGAGTGTGATTGAGCAGATGGAAAAATTTGGAGAGAATTTAGAATATAATGAAGTGGCAGCTTCTTCTTCGGCTTTTGCTTTTGGTAGTCCCAATATTGGTGTAAGTGTAACTACTTCCACTTCACCTCCCATTTTTCCTTCTTTTAATAATCTCCCACCATCCACCGCCCTTTCAATCAGTAACGCCACTGCACCACCGCCTTTTCCACCCTATTCCGCCGCTGCCCGGTCCAGATACCATCTTCCCGCCACCCCAATTTCTGGCATGAAAGGAGAGGGGAAGGAATCAGAGTCAATGGGAGCGATGAGGGAGATGATATACAGAATAGCAGCGATGCAGCCAATAGAGATAGACCCAGAAGCGGTGAAACCACCAAAGCGTCGGAATGTTAAAATTTCAAAAGATCCTCAGAGTGTAGCGGCCAGGCTTAGAAGAGAGAGAATAAGCGAAAGAATTAGAATTCTTCAAAGAATTGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATTCATTACCTCAAGTTCTTGAAAAACCAACTTCATTCACTCCAAATTGCCGCCGCCGCCGCCGCCACCAACCACCTCCCCTCCGCCGCCGCCTACCCCTTTCCCACCGCCATCTTCTCCGCTGGGACTACTAATTATAATAAAAAACATCACTACCTGGAGGATGCTTCATTTTAA 759 47.83 MDMADAEHAIKWGRDEMDIVSVIEQMEKFGENLEYNEVAASSSAFAFGSPNIGVSVTTSTSPPIFPSFNNLPPSTALSISNATAPPPFPPYSAAARSRYHLPATPISGMKGEGKESESMGAMREMIYRIAAMQPIEIDPEAVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAAAAATNHLPSAAAYPFPTAIFSAGTTNYNKKHHYLEDASF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28107261 28108368 - CrPI670011_08g015460.1 Cre08g1546 506464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1546 252 Gene3D - 149 211 IPR036638 GO:0046983(InterPro)
Cre08g1546 252 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 89 237 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1546 252 SMART finulus 158 207 IPR011598 GO:0046983(InterPro)
Cre08g1546 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983(InterPro)
Cre08g1546 252 FunFam BHLH transcription factor 155 219 - -
Cre08g1546 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 210 IPR036638 GO:0046983(InterPro)
Cre08g1546 252 Pfam Helix-loop-helix DNA-binding domain 161 202 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1586 Cre-Chr2:28515524 Cre08g1546 Cre-Chr8:28107261 5.20E-38 dispersed
Cre07g1710 Cre-Chr7:32552197 Cre08g1546 Cre-Chr8:28107261 2.90E-22 dispersed
Cre08g1546 Cre-Chr8:28107261 Cre09g0034 Cre-Chr9:680963 7.10E-29 dispersed
Cre08g1546 Cre-Chr8:28107261 Cre08g1551 Cre-Chr8:28163974 1.30E-06 proximal
Cre04g1180 Cre-Chr4:30400511 Cre08g1546 Cre-Chr8:28107261 1.50E-36 transposed
Cre05g2188 Cre-Chr5:33610785 Cre08g1546 Cre-Chr8:28107261 2.70E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54241 PF00010 HLH 1.60E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1546 - - - 0.0