Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1549 ATGTCAAAGAACCGCGGCGGACTCCTCCCAAATTCCCTCGCGGCCATTAATTTTCTCCAAGTCAGTCAGACTCGTCTGTTGGTCTTCTCATATGCCTTTCTAGATCGAGATCTGTATATCGATTCTGCTGTTGAAGCTCGTAAAGGAATCTCTGATGTTGTGAATTGTCTGTTATCGTCTTTTGGTCTTCTCATATTCATTTCTAGATCAAGACTACAGGAAGAAGTAGCCATGGCTGATCAGGTTCAACATCCCACCATCTACCAGAAGGTTGCTGGTCAGCTCTCCCTTCAGTCGAGGGTTGCTTCGGGTTTCCGTTCTTGTGATGATGGCTTTAGGAACCCTGCACTTTATCAGAGGCGTGCATCAATCAGCAATCATACAAATGCTGCTTTTCAATATCCTGCTGTGCAATCCTGTGTTGCTACTACTGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTTGTTGCTGCCCCTGCGGAGAAAGGAAACTTTATGATCGACTTTCTTATGGGTGGTGTGTCTGCTGCTGTGTCCAAGACAGCTGCTGCCCCGATTGAGCGTGTCAAGCTCTTGATTCAAAATCAGGATGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTCAAGCGCACAATCCAAGACGAGGGTTTTGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTCGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCCGGCGGTGCTGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCCCGTACCCGATTAGCAAACGACGCCAAAGCTGCCAAGAAAGGTGGAGAAAGGCAATTCAATGGACTGGTTGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCCGGTCTCTACCGTGGATTTAACATTTCTTGTGTTGGTATCATCGTTTACCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCCGTTTTATTGACTGGGAAGATGCAGGATAGCTTCTTCGCTAGCTTTGCCTTGGGTTGGCTCATCACCAATGGTGCCGGTCTTGCATCTTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAGATTTTGAAGAACGAAGGTGCCAAGTCTCTCTTTAAGGGTGCTGGTGCGAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTATGATAAGTTGCAGGTGATTGTCTTCGGGAAGAAATACGGATCGGGTGGTGCTTAA 1404 46.37 MSKNRGGLLPNSLAAINFLQVSQTRLLVFSYAFLDRDLYIDSAVEARKGISDVVNCLLSSFGLLIFISRSRLQEEVAMADQVQHPTIYQKVAGQLSLQSRVASGFRSCDDGFRNPALYQRRASISNHTNAAFQYPAVQSCVATTDLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA 467
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 28145524 28148309 + CrPI670011_08g015490.1 Cre08g1549 506467
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1549 467 Gene3D Mitochondrial carrier domain 168 463 IPR023395 -
Cre08g1549 467 ProSiteProfiles Solute carrier (Solcar) repeat profile. 165 258 IPR018108 -
Cre08g1549 467 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 163 464 IPR002113 GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre08g1549 467 FunFam ADP,ATP carrier protein, mitochondrial 168 463 - -
Cre08g1549 467 Pfam Mitochondrial carrier protein 370 458 IPR018108 -
Cre08g1549 467 Pfam Mitochondrial carrier protein 270 364 IPR018108 -
Cre08g1549 467 Pfam Mitochondrial carrier protein 165 262 IPR018108 -
Cre08g1549 467 ProSiteProfiles Solute carrier (Solcar) repeat profile. 270 362 IPR018108 -
Cre08g1549 467 PRINTS Adenine nucleotide translocator signature 244 256 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre08g1549 467 PRINTS Adenine nucleotide translocator signature 167 179 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre08g1549 467 PRINTS Adenine nucleotide translocator signature 375 391 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre08g1549 467 PRINTS Adenine nucleotide translocator signature 211 232 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre08g1549 467 PRINTS Adenine nucleotide translocator signature 270 283 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cre08g1549 467 PRINTS Mitochondrial carrier protein signature 170 183 IPR002067 GO:0055085(InterPro)
Cre08g1549 467 PRINTS Mitochondrial carrier protein signature 183 197 IPR002067 GO:0055085(InterPro)
Cre08g1549 467 PRINTS Mitochondrial carrier protein signature 335 353 IPR002067 GO:0055085(InterPro)
Cre08g1549 467 PRINTS Mitochondrial carrier protein signature 379 401 IPR002067 GO:0055085(InterPro)
Cre08g1549 467 PRINTS Mitochondrial carrier protein signature 285 303 IPR002067 GO:0055085(InterPro)
Cre08g1549 467 PRINTS Mitochondrial carrier protein signature 233 253 IPR002067 GO:0055085(InterPro)
Cre08g1549 467 SUPERFAMILY Mitochondrial carrier 165 452 IPR023395 -
Cre08g1549 467 ProSiteProfiles Solute carrier (Solcar) repeat profile. 370 456 IPR018108 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1494 Cre-Chr1:28179126 Cre08g1549 Cre-Chr8:28145524 1.90E-108 dispersed
Cre07g0604 Cre-Chr7:3862940 Cre08g1549 Cre-Chr8:28145524 1.50E-163 dispersed
Cre08g1549 Cre-Chr8:28145524 Cre08g1646 Cre-Chr8:28970917 1.00E-52 dispersed
Cre08g1549 Cre-Chr8:28145524 Cre08g1650 Cre-Chr8:28994345 2.70E-29 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1549 K05863 - csv:101203733 739.569