Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre08g1549 | ATGTCAAAGAACCGCGGCGGACTCCTCCCAAATTCCCTCGCGGCCATTAATTTTCTCCAAGTCAGTCAGACTCGTCTGTTGGTCTTCTCATATGCCTTTCTAGATCGAGATCTGTATATCGATTCTGCTGTTGAAGCTCGTAAAGGAATCTCTGATGTTGTGAATTGTCTGTTATCGTCTTTTGGTCTTCTCATATTCATTTCTAGATCAAGACTACAGGAAGAAGTAGCCATGGCTGATCAGGTTCAACATCCCACCATCTACCAGAAGGTTGCTGGTCAGCTCTCCCTTCAGTCGAGGGTTGCTTCGGGTTTCCGTTCTTGTGATGATGGCTTTAGGAACCCTGCACTTTATCAGAGGCGTGCATCAATCAGCAATCATACAAATGCTGCTTTTCAATATCCTGCTGTGCAATCCTGTGTTGCTACTACTGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTTGTTGCTGCCCCTGCGGAGAAAGGAAACTTTATGATCGACTTTCTTATGGGTGGTGTGTCTGCTGCTGTGTCCAAGACAGCTGCTGCCCCGATTGAGCGTGTCAAGCTCTTGATTCAAAATCAGGATGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTCAAGCGCACAATCCAAGACGAGGGTTTTGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTCGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCCGGCGGTGCTGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCCCGTACCCGATTAGCAAACGACGCCAAAGCTGCCAAGAAAGGTGGAGAAAGGCAATTCAATGGACTGGTTGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCCGGTCTCTACCGTGGATTTAACATTTCTTGTGTTGGTATCATCGTTTACCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCCGTTTTATTGACTGGGAAGATGCAGGATAGCTTCTTCGCTAGCTTTGCCTTGGGTTGGCTCATCACCAATGGTGCCGGTCTTGCATCTTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAGATTTTGAAGAACGAAGGTGCCAAGTCTCTCTTTAAGGGTGCTGGTGCGAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTATGATAAGTTGCAGGTGATTGTCTTCGGGAAGAAATACGGATCGGGTGGTGCTTAA | 1404 | 46.37 | MSKNRGGLLPNSLAAINFLQVSQTRLLVFSYAFLDRDLYIDSAVEARKGISDVVNCLLSSFGLLIFISRSRLQEEVAMADQVQHPTIYQKVAGQLSLQSRVASGFRSCDDGFRNPALYQRRASISNHTNAAFQYPAVQSCVATTDLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA | 467 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 28145524 | 28148309 | + | CrPI670011_08g015490.1 | Cre08g1549 | 506467 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre08g1549 | 467 | Gene3D | Mitochondrial carrier domain | 168 | 463 | IPR023395 | - | |
| Cre08g1549 | 467 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 165 | 258 | IPR018108 | - | |
| Cre08g1549 | 467 | PANTHER | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 163 | 464 | IPR002113 | GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cre08g1549 | 467 | FunFam | ADP,ATP carrier protein, mitochondrial | 168 | 463 | - | - | |
| Cre08g1549 | 467 | Pfam | Mitochondrial carrier protein | 370 | 458 | IPR018108 | - | |
| Cre08g1549 | 467 | Pfam | Mitochondrial carrier protein | 270 | 364 | IPR018108 | - | |
| Cre08g1549 | 467 | Pfam | Mitochondrial carrier protein | 165 | 262 | IPR018108 | - | |
| Cre08g1549 | 467 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 270 | 362 | IPR018108 | - | |
| Cre08g1549 | 467 | PRINTS | Adenine nucleotide translocator signature | 244 | 256 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cre08g1549 | 467 | PRINTS | Adenine nucleotide translocator signature | 167 | 179 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cre08g1549 | 467 | PRINTS | Adenine nucleotide translocator signature | 375 | 391 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cre08g1549 | 467 | PRINTS | Adenine nucleotide translocator signature | 211 | 232 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cre08g1549 | 467 | PRINTS | Adenine nucleotide translocator signature | 270 | 283 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cre08g1549 | 467 | PRINTS | Mitochondrial carrier protein signature | 170 | 183 | IPR002067 | GO:0055085(InterPro) | |
| Cre08g1549 | 467 | PRINTS | Mitochondrial carrier protein signature | 183 | 197 | IPR002067 | GO:0055085(InterPro) | |
| Cre08g1549 | 467 | PRINTS | Mitochondrial carrier protein signature | 335 | 353 | IPR002067 | GO:0055085(InterPro) | |
| Cre08g1549 | 467 | PRINTS | Mitochondrial carrier protein signature | 379 | 401 | IPR002067 | GO:0055085(InterPro) | |
| Cre08g1549 | 467 | PRINTS | Mitochondrial carrier protein signature | 285 | 303 | IPR002067 | GO:0055085(InterPro) | |
| Cre08g1549 | 467 | PRINTS | Mitochondrial carrier protein signature | 233 | 253 | IPR002067 | GO:0055085(InterPro) | |
| Cre08g1549 | 467 | SUPERFAMILY | Mitochondrial carrier | 165 | 452 | IPR023395 | - | |
| Cre08g1549 | 467 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 370 | 456 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre01g1494 | Cre-Chr1:28179126 | Cre08g1549 | Cre-Chr8:28145524 | 1.90E-108 | dispersed | |
| Cre07g0604 | Cre-Chr7:3862940 | Cre08g1549 | Cre-Chr8:28145524 | 1.50E-163 | dispersed | |
| Cre08g1549 | Cre-Chr8:28145524 | Cre08g1646 | Cre-Chr8:28970917 | 1.00E-52 | dispersed | |
| Cre08g1549 | Cre-Chr8:28145524 | Cre08g1650 | Cre-Chr8:28994345 | 2.70E-29 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre08g1549 | K05863 | - | csv:101203733 | 739.569 |